G237101


Basic Information

Item Value
gene id G237101
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11957060 ~ 11958114 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268962
ACTCCCATTTGGGTCACGGCACCAATGTAACTGGTCTTACACTGCTTCAGAGCGGGATTCGAACCAGCATCAACTGGCATAGCAGGGGGTGTCCTAAAAAGACTGGGGTAAAAGCCATGTGGTACTCACTGCAGAGTCTATGATGGCCAGCTCCTCCTCTCAGGACGTCCAGTGGGGTGGAGGGATAGAACTCTCCACCTCTCTGGATGTCGAATGGGGTGGAGAGATAGAGTTGTGGGTAGGGTTAGGGTAGGATTAAGGTGTGGTTGTACATCCGCTCCTCCTCGCTGGACGTCTAGCGAGGGGGAGCTAACATAAGCCCCTATAGCTTGCCTCTTGAGGCCAATGGAGTGAGGTTTACCTGCACAGCTATATACCACTTGCCTAAACCTCACTCTCCTCCGGGTCACGGCACCAATGTAACTGGTCCTACTTGCACTCTGAGTGCAATTCAAACCAGCATTAACCGGCATGGGAGAAGGGCCTGCTAACAAGGACTCTAAAACCAGCAGCCCCTAAATGTGTCTCTTGAGGTCAGGGAAGTGAGGTTTACTTGTACAGCTCTTAATAGCTGGCCTCTTTATATATACAGCAGTTTAGAGATTTGAGAGCTCAACTGCGTTTGTCCCCAATCACTTTAAACGTACAAAAAAACTCAGCATGAACATTCGGTTAAACATCTCCTTTTGTGTTCCACCGAAGTAAGAAAATCATATCGGTTTGGAATGGCATGAGAGTGAGTGATGAATGAATTTTATTTAAGCTCGTGTACCTGGTAGATGGATGCTCCTACCTGTGAAAACTGTATGACTGTGAAGATTGACATTTTATTTTGCATCAACCTTTAAGGTAAAATGAGCTTTTCTCTGGTGAAAGAGCATATATTGTGTCACACTGTTCAAAACAGGCTATTGAACTTTAATTTATGCTCCTATATAGCTGATTTGCAATAACTATGTTTATGGAAACACAATTAAACATATTTCTGTAAAATTCTGCTTTTAGATGCCATAGTCTCAGGATCTGCCACTTGTAATAAACACAATGAAATACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268962 True 1055 lncRNA 0.44 1 11957060 11958114

Neighbor

gene id symbol gene type direction distance location
CI01000054_11873443_11903635 SEPT7 coding downstream 52804 11872998 ~ 11904256 (-)
CI01000054_11815575_11845247 EEPD1 coding downstream 110914 11815297 ~ 11846146 (-)
CI01000054_11780397_11781842 SNAPIN coding downstream 175184 11778890 ~ 11781880 (-)
CI01000054_11758803_11774872 NA coding downstream 182188 11758297 ~ 11774872 (-)
CI01000054_11724484_11731711 SYT11A coding downstream 225349 11723995 ~ 11731711 (-)
CI01000054_11964578_11981248 NA coding upstream 6263 11964377 ~ 11981319 (-)
CI01000054_12078098_12079883 AAMDC coding upstream 119816 12077930 ~ 12079896 (-)
CI01000054_12106998_12109333 AQP11 coding upstream 148071 12106185 ~ 12109835 (-)
CI01000054_12217279_12251613 MYO7A, MYO7AA coding upstream 258433 12216547 ~ 12251613 (-)
CI01000054_12266910_12288366 CAPN5A, CAPN5 coding upstream 308702 12266816 ~ 12288366 (-)
G237087 NA non-coding downstream 45910 11909433 ~ 11911150 (-)
G237079 NA non-coding downstream 167422 11782600 ~ 11789638 (-)
G237125 NA non-coding downstream 342153 11614543 ~ 11614907 (-)
G236815 NA non-coding downstream 378362 11578372 ~ 11578698 (-)
G237179 NA non-coding upstream 10795 11968909 ~ 11969500 (-)
G237181 NA non-coding upstream 13554 11971668 ~ 11971928 (-)
G237184 NA non-coding upstream 17453 11975567 ~ 11975935 (-)
G237207 NA non-coding upstream 39099 11997213 ~ 11997840 (-)
G236748 NA other downstream 661276 11285194 ~ 11295784 (-)
CI01000054_10872970_10881017 SDHAF3 other downstream 1075844 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 other downstream 1137715 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 2089848 9863321 ~ 9867212 (-)

Expression


Co-expression Network