G237081


Basic Information

Item Value
gene id G237081
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12039761 ~ 12098990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268925
CTAGAATTACAGAATTAAATTATTTTAATTTTAATTACTTATAAGCAGTTTATTCCATTACTTTAATAAATTGCCACTCCTGGTTTGTGTAAATAAATGAAGAAAGAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGAAGTCACATAACTAGCACTGTCATACACTTTTACTGATCACATGACTTATGGATGGCTATTTCCGTTCTGGGACACCATCGGCTACCAAAACCATTAAGTACTGGAATCATTCATTACAGCTTTGAAATGAATGAAAAGACAACATTTACCCATTTATTCTTTTATTTTATTTTTTATACAGAAAAGTGTAGGCCTTCCATCAATGATCAGTCAAACCCCTTTATGCGGTCGGCACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACATAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAAATAATCTGAACTCTAATTA
>TU268926
GATGAATCAGTGTTTTTGAACAAATCTTTTGAATGAACGATTCAATGACAAATACATGTTTTAACAGTCAGTTGTCGCCACCTAGTGGAATTAGATGTAATTGATACAACCATTATTTGAACGAACCGGTTTGATTGTCAAAGGTTTAATAGAAGTGGGAGAATCGTTGTCAGTAATAAAGTAGGATTGCGTGGTGCTTGAATCGAGATCGCAATCTTTTTACGATTAATCGTGCAGCTCTAACTTCAAACATTTCGACAAAGCCCTTATTAAAATAGAGATTTGCTGAAGATGCTAAAATGTTACACAAAAAGTCAGGAAGGCCGTCAGAGTCCAATTCATCTTCCTCCATGCCTCTTACCCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACGTAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTTTGACCTCTCAGTTTATCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAACATGATATAGAAATATAAACAGAGGATATGGAGAGGAAAAATAATCTGAAGTCTAAAAACACACAGCCTGTTTCCAACCATCCTTCTCAGACAAATGCCTATATCTTCAAGCGATTGGACCCACTGCTTTGAGGACCTGAAGTCAGACGCACAGAACATGAACCTGACCCAGAATCCTCAAAGACAGAACGGGCCCTATCCGACTCGTCAACGTATCATCACTGAAGGGAATTTCAGTGGGTAAGTGTGCATGGTGTGCTAGGAAGTGAACGCTCACCTACGGACAGCCAGACCTCTGAGCAGCTTGTAACGCAGCGACTCCGCCTGAGCGATGGCGCAGAGACCCCAGGTGGCGACCTTCTCAGCGTACAGCTACAAAGAAAAAAGACCCAATACATTAGAACTAGCCATCACAATCTAATTTTGGACACCATTTACAACTTCACCAATCTTACCTCCACACTGCCCTCAGGGAACCCGAATTGTTTCTGAATGACAGCAGTCACTTCACGAATGCAGGGGCCTTTCATGAATATAGGTACTACTTTTTTTTTTTTTTTTTTTTTTAAGACTGAAAATGATTCAAATACAGTAGCCAACATTTGTAGTGGATCAAAACCTTTCAAAGTTGCCCTAAAACCTTTTTAGGACAACTTAGTTCTTAGGACAACTTTGATGAACTTTTTTGATCCACTTCAAATGTTGACAAGTGTAGTTTAGCCCACTAACAAAAGTATCATGGATAATACGTTTGTTTTGGACATGCGCAATTTCAGTGCTTCAGAATACCAAGTAAATAAAATGGCCTGTCATCTGACACCTTCACAGCTCTATAGGTTACAAAACCAAAATCTGCAAATGTTTTGTACTATAACCTGAGCTACAGGAACAATCAGTAAATGAAAACCAGTGGTCTTCATCCTAAAAGTAAAGCTGTTATTAAATAAAGCTAAGCATCTAGAGATTAACACATGAGGATATCAGTGTAGTTCAGGGTAAAAACATTCTGCATGCACATAGAAACCGTTAATGGGGGAAGAAAAAAGAAAAAAAAGAAAAAAAGAAAAAGAAGTCACATAACTAGCACTGTCATACACTTTTACTGATCACATGACTTATGGATGGCTATTTCCGTTCTGGGACACCATCGGCTACCAAAACCATTAAGTACTGGAATCATTCATTACAGCTTTGAAATGAATGAAAACAGACAACATTTCCCCATTTATTCTTACTCGTCATCGAATCATCACTGAAGGAAACGTGGAGGTCATTTGACCTCAATACTGGGTTTTTAGGGTCTTACCCCTTTATGCGGTCGGCACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACATAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAAATAATCTGAACTCTAATTA
>TU268929
ACCTCCGAGCAGCTTGTAGCGCAGCGACTCTGCCTGAGTGATGGCGCAGAGACCCCGGGTGGCGACCTTCTCAGCGTACAGCTACAAAGAAAAAAGACCCAATACATTAGAACTAGCCATCACAATCTAATTTTGGACACCATTTACAACTTCACCAATCTTACCTCCACACTGCCCTCAGGGAACCCGAATTGTTTCTGAATGACAGCAGTCACTTCACGAATGCAGGGGCCTTTCATGAATATAGGTACTACTTTTTTTTTTTTTTTTTTTTTTAAGACTGAAAATGATTCAAATACAGTAGCCAACATTTGTAGTGGATCAAAACCTTTCAAAGTTGCCCTAAAACCTTTTTAGGACAACTTAGTTCTTAGGACAACTTTGATGAACTTTTTTGATCCACTTCAAATGTTGACAAGTGTAGTTTAGCCCACTAACAAAAGTATCATGGATAATACGTTTGTTTTGGACATGCGCAATTTCAGTGCTTCAGAATACCAAGTAAATAAAATGGCCTGTCATCTGACACCTTCACAGCTCTATAGGTTACAAAACCAAAATCTGCAAATGTTTTGTACTATAACCTGAGCTACAGGAACAATCAGTAAATGAAAACCAGTGGTCTTCATCCTAAAAGTAAAGCTGTTATTAAATAAAGCTAAGCATCTAGAGATTAACACATGAGGATATCAGTGTAGTTCAGGGTAAAAACATTCTGCATGCACATAGAAACCGTTAATGGGGGAAGAAAAAAGAAAAAAAAGAAAAAAAGAAAAAGAAGTCACATAACTAGCACTGTCATACACTTTTACTGATCACATGACTTATGGATGGCTATTTCCGTTCTGGGACACCATCGGCTACCAAAACCATTAAGTACTGGAATCATTCATTACAGCTTTGAAATGAATGAAAACAGACAACATTTCCCCATTTATTCTTACTCGTCATCGAATCATCACTGAAGGAAACGTGGAGGTCATTTGACCTCAATACTGGGTTTTTAGGGTCTTACCCCTTTATGCGGTCGGCACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACATAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAAATAATCTGAACTCTAATTA
>TU268930
GTTTTTAGGGTCTTACCCCTTTATGTGGTCGGCACTGGGGCTCCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTATCTGAGCAGTACGTGGCGGACAGCGGTGTCAACATAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAAATAATCTGAACTCTAATTA
>TU268932
GTTTTTAGGGTCTTACCCCTTTATGTGGTCGGCACTGGGGCTCCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCTTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGTTACCCCTTTATGCGGTCGGCACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACATAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAAATAATCTGAACTCTAATTA
>TU268921
GTTTTTAGGGTCTTACCCCTTTATGTGGTCGGCACTGGGGCTCCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCTTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACCCCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACGTAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTTTGACCTCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCGCTCTCCATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACGGAGGATATGGAAAGAAAAAATAATCTGAACTCTAAAACACACGGCCTGTTTCAAACCATCCTTCTCAGACAAATGCCTTTATATCTTCAAGCGATTGGACCCACTGCTTTGAGGACCTGAAGTCAGACGCACAGAACATGAACCTGACCCAGAATCCTCAAAGACAGAACGGGCCCTTTCCGACTCATCGTATCATCACTGAAGGAAATTTCAGTGGGTAAGTGTGAATGGTGTGCTAGGAACTGAACGCTCACCTACAGACAGCCAGACCTCCGAGCAGCTTGTAGCGCAGCGACTCTGCCTGAGCGATGGCGCAGAGACCCCGGGTGGCGACCTTCTCAGCGTACAGCTACAAAGAAAAAAGACCCAATACGTTAGAACTAGCCATCACAATCTAATTTTGGACACCATTTACAACTTTACCAATCTTACCTCCACACTGCCCTAGGGGAAACCGAATCGTTTCTGAACGACGGCAGTCACTTCACGAATGCAGGGGCCTTTCATGAATATAGGTACTACTTTTTCTGTTTTTTAAAGACTGAAAATTATTCAAATAGTTTAGCCCACTAACAAAAGCACCATGGATAATACATTTGTTTTGGACACGTGCAATTTTAGTGCTTCAGAATACCAAGTAAATAAAATGGCATGTCATCTGACACCTTCACAGCTCTATAGGTTACAAAACCAAAATCTGCAAATGTTTTGTACCATAACCTGAGCTACAGGAACTATCAGTAAATGAAAACCAGTAGTTTTTATCCTAAAAGTAAAGCTGTTATTAAATAAAGCTAAGCATCTAGAGATTAACACATGAGGATATCAGTGTAGTTCAGGGTAAAAACATTCTGCATGCACATAAAAACAGTTAACAGGAAAGAAAAGAAAGGAAAAAAAGTCACATAACTAGCACCGTCATACACCTTTTACTGGTCAAATGACTTATGGATGGCCATTTCAATTCTGGGACACCATCAGCTACCAAAACCATTAAGTACTGGAATCATTCATTACAGCTTTGAAATGAATGAAAACAGACAACATTTCCCCATTTATTCTTACTCGTCATCGAATCATCACTGAAGGAAACGTGGAGGTCATTTGACCTCAATACTGGGTTTTTAGGGTCTTACCCCTTTATGCGGTCGGCACTGGGGCTCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTATATGAACATACACAATCACAAAGATATATAAAACTTTGACCAGGA
>TU268933
GTTTTTAGGGTCTTACCCCTTTATGTGGTCGGCACTGGGGCTCCCCTGTGGCATGACTGGGCCCTCGGGCTTGGCCCCCTTCTGTTCGGACACTGGGGTGGTGGGGAGGACCTCTTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCTGAGCAGTACGTGGCGGACAGCGGTGTCAACGTAGTAGTTAACGGGGTCTCCACTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTGGCTCTCTGACCCCTCAGTTTACCAGAGACGACCACCTCACAACCCTTGGCCCCACTCTCCATGAAGCGCAGCACACCGTAGCAGGCCCTGAGGACAACAAATGTGATATAGAAATATAAACAGAGGATATGGAAAGGAAAAATAATCTGAACTCTAAAACACATGGCCTGTTTCAAACCATCCTTCTCAGACAAATGCCTATATCTTCAAGCGATTGGACCCACTGCTTTGAGAACCAGAAGTCAGACGCACAGAACATGAACCTGACCCAGAATCCTCAAAGACAGAACGGGCCCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268925 False 824 lncRNA 0.43 4 12039761 12098990
TU268926 False 2334 lncRNA 0.44 3 12039761 12050207
TU268929 False 1480 lncRNA 0.43 4 12039761 12055511
TU268930 False 539 lncRNA 0.55 3 12039761 12048110
TU268932 False 649 lncRNA 0.57 3 12039761 12048110
TU268921 False 1828 lncRNA 0.47 2 12041866 12048110
TU268933 True 616 lncRNA 0.53 2 12044467 12048110

Neighbor

gene id symbol gene type direction distance location
CI01000054_11964578_11981248 NA coding downstream 58442 11964377 ~ 11981319 (-)
CI01000054_11873443_11903635 SEPT7 coding downstream 135505 11872998 ~ 11904256 (-)
CI01000054_11815575_11845247 EEPD1 coding downstream 193615 11815297 ~ 11846146 (-)
CI01000054_11780397_11781842 SNAPIN coding downstream 257885 11778890 ~ 11781880 (-)
CI01000054_11758803_11774872 NA coding downstream 264889 11758297 ~ 11774872 (-)
CI01000054_12106998_12109333 AQP11 coding upstream 7195 12106185 ~ 12109835 (-)
CI01000054_12217279_12251613 MYO7A, MYO7AA coding upstream 117557 12216547 ~ 12251613 (-)
CI01000054_12266910_12288366 CAPN5A, CAPN5 coding upstream 167826 12266816 ~ 12288366 (-)
CI01000054_12302853_12308339 DCUN1D5.L, DCUN1D5, DCNL5 coding upstream 203497 12302487 ~ 12308339 (-)
CI01000054_12309670_12316748 EIF2A coding upstream 210680 12309670 ~ 12316748 (-)
G237215 NA non-coding downstream 6114 12033157 ~ 12033647 (-)
G237214 NA non-coding downstream 7351 12032169 ~ 12032410 (-)
G237213 NA non-coding downstream 10079 12029316 ~ 12029682 (-)
G237212 NA non-coding downstream 10745 12028764 ~ 12029016 (-)
G237207 NA non-coding downstream 41921 11997213 ~ 11997840 (-)
G237097 NA non-coding upstream 12429 12111419 ~ 12144763 (-)
G237237 NA non-coding upstream 67268 12166258 ~ 12167308 (-)
G237231 NA non-coding upstream 114444 12213434 ~ 12215862 (-)
G237302 NA non-coding upstream 219580 12318570 ~ 12320593 (-)
G237303 NA non-coding upstream 259310 12358300 ~ 12360324 (-)
G236748 NA other downstream 743977 11285194 ~ 11295784 (-)
CI01000054_10872970_10881017 SDHAF3 other downstream 1158545 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 other downstream 1220416 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 2172549 9863321 ~ 9867212 (-)

Expression


Co-expression Network