G237237


Basic Information

Item Value
gene id G237237
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12166258 ~ 12167308 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU269121
TGTTTAATTCTGAAGTTTATTCGTCCCATTTCATTAAGAATTTCGATTCATCAAAAGGCCTTATAAACAGTTTATGGCTCGCAAAGACACTGATTGCTTACAGGAAAGATTTTCTTCTAAACAAATCCCATCAGTCCACTGAAATGGCAACAGATTGCATGTTCGTGGGTTGTGCCATCTTCGTAACGTCGTACTTTTCGTTTAAGGCCAAAGGGTACATGAACGCAACATCAGAAAATTTCAATTTCATTAATGTTTGTGGCAACACAAACCATCTTAATGCACAGAATGCAGTGAGGTTTTGTTTAATTTCCGACAAGTGGAGGGTTTATGGGACAGAATGGACCTCAGGTAGTCGTTTCATCATCTGAAAGGCAGTCTCTTCATGCACAGGCATCCTTCATAGTACCTTAATCAATAGTCTGTTACAGATCATCAAGTTTCAATATCAAAAACGTTTATCGGACGAGATCTTTCTGTCGATGAGATCACAGTACAATCGTGCCACGCATCATGTTGCGATCTATGAGCCGACAAACGCACATACGCACACTCTCACACATACACAAACACTTTAAAAAACATTAATCATGTTTCCATGATCTGACAGGCATTAAACACAAAATCAAACAGAAAAACTGACAGTGAGACCCAGAGAAAGTCAGTGACTGCAGACACCCCTCAGATCCTTTAACAGCAGCACTAGAGGACGAGGGACGATGAACCCTCGGCATGAGAGCTCCTGACCAGGGTGAGAGAGAGAGACGGCTGACGGGACGTTCTGGGGGTCGGGGCGGAGGACAGGTGGGGCCGGGGGTCGTCCCAGGGGGGCTAGCGGTTGTTCTTTGCTGCCTCCTTAGCCGCTATGATCAGCGGCGTGAGGCTGGACAAAGGCTTGGCCACTTTCAGGAACTGGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU269121 True 918 lncRNA 0.45 3 12166258 12167308

Neighbor

gene id symbol gene type direction distance location
CI01000054_12106998_12109333 AQP11 coding downstream 56423 12106185 ~ 12109835 (-)
CI01000054_12078098_12079883 AAMDC coding downstream 86362 12077930 ~ 12079896 (-)
CI01000054_11964578_11981248 NA coding downstream 184939 11964377 ~ 11981319 (-)
CI01000054_11873443_11903635 SEPT7 coding downstream 262002 11872998 ~ 11904256 (-)
CI01000054_11815575_11845247 EEPD1 coding downstream 320112 11815297 ~ 11846146 (-)
CI01000054_12217279_12251613 MYO7A, MYO7AA coding upstream 49239 12216547 ~ 12251613 (-)
CI01000054_12266910_12288366 CAPN5A, CAPN5 coding upstream 99508 12266816 ~ 12288366 (-)
CI01000054_12302853_12308339 DCUN1D5.L, DCUN1D5, DCNL5 coding upstream 135179 12302487 ~ 12308339 (-)
CI01000054_12309670_12316748 EIF2A coding upstream 142362 12309670 ~ 12316748 (-)
CI01000054_12821724_12830490 RAB27A coding upstream 653568 12820876 ~ 12830490 (-)
G237097 NA non-coding downstream 21495 12111419 ~ 12144763 (-)
G237081 NA non-coding downstream 67268 12039761 ~ 12098990 (-)
G237221 NA non-coding downstream 94775 12066222 ~ 12071483 (-)
G237215 NA non-coding downstream 132611 12033157 ~ 12033647 (-)
G237214 NA non-coding downstream 133848 12032169 ~ 12032410 (-)
G237231 NA non-coding upstream 46126 12213434 ~ 12215862 (-)
G237302 NA non-coding upstream 151262 12318570 ~ 12320593 (-)
G237303 NA non-coding upstream 190992 12358300 ~ 12360324 (-)
G237332 NA non-coding upstream 204386 12371694 ~ 12371915 (-)
G237333 NA non-coding upstream 205826 12373134 ~ 12373576 (-)
CI01000054_11780397_11781842 SNAPIN other downstream 383774 11778890 ~ 11781880 (-)
G236748 NA other downstream 870474 11285194 ~ 11295784 (-)
CI01000054_10872970_10881017 SDHAF3 other downstream 1285042 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 other downstream 1346913 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 2299046 9863321 ~ 9867212 (-)

Expression


Co-expression Network