XLOC_000996


Basic Information

Item Value
gene id XLOC_000996
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8202390 ~ 8205228 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003331
GTTTCAGGTGAATGGTGTTTTACCTCTGTTGCCCCTGACTTTCCCCGTTCTCTGGGTTCTGGTCTGCCTGTTCGGAGAGGCCAGTGTTCTCTTACAGATGGGCACACAGCCAGTGGAGTGCTGGGTTCAGTCAAGAGGAAACCACACAATAGCTGACTGTACATTTATTGCTGTAATCACATGAATGAATATATTGTTGGCAATGGTTTGGAATGCAAAAATGACTTTCCCATTTCATTGAACAGGAAATGTGGAAGCCGACCTGCAAGAAATGTTCCTTAGTGTTTTGGGGTCAAACGTTGACACTACTTCCAGTCTGCTGCACGGTCTGAGATCTGTGACTGTAAGTGCAAAAGACCAAGAAAGATGTAAATATGAGTGTTTGAAATCAAGGCTCAGTTAAAAGCTCCAGTTATTACTTTCATGTAGTTTGAATATAAAGTCGATCAAAGAGGAGTTCAGATCTGAACTGCCTGAAATGGGTCGTcggttttattatttaatgtcataacatttacatattttccaGTGTGTGTTGCAGTTGGAGTTATCAGATGCACCTTCCCTTATATTTCTTGTTTCTTGTGCTAAACTAATAAGGCCTTTCATGTGGGCAGTAAATTATATTCTATCTCTCACTGTAATGCAATACTGTAAGATGAGCTTTGACTGATAACTTGAGTGCACAGGCACTGCATGTACTTTGTACTAGTATTACCTTTCTAAAAATGCACTCATAagtatgaaaaaatataaaataggcCAAATATGATAGCGGGATCAGTaataaaacaatcattttattcagacattaaatagattaaaagacatcaacacaaatgaagatattttgaagaatgttggtagccactgacttctatagtatattttgttcctactatagatgtcaatggggcttttttcaaaaaattaaaaataaataaataaatacataaataaatcaataaataaataaataaataaaattctgaataTAAGCATATAGAACAATTTAAGTGTGAGGAAATATtgaggacattttcatttttgggtaaactatcccttagttattaataatattattgtaatattatttttcattaataaacatttttttctttatttttgatcaaatactaTACGTTTAACGTTAAAAGGcataggagtgtgtgtgtgtgcgcgcttctCCACCAGAGACTGTATATTGTAATTATCATTTATATAAGGATTAATGatgttattatttacatattaaggggatagttcaccctaatatttacattttgtcatGATTAACTCCACCTGCTTGAGTTTCTTgcctttgttgaacacaaatgaagatattttgaagaatgttggcagccactgacttctatagtatattttgttcctactatggatgtcattggggctttaacaaaaaaataaaataaaaataaaaatcagaacaTAAGCATATAAAACAACTTAAGTGTGAGGAAATATTtgaggacattttcattttttggtaaactatctcttttatgtagttattaataatatttttgtaatattattttacattaataaacatttttttctttatttttgatcaaatactaAAAGTTTAACGTTAAAAGGCAtaggagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatctacaGGCTTCTCCACTAGagactgtaaatatatattgtattaatcatttatattaatgTAAGGATTACATAAGGATTAATGATGTCATTATTTACATATTAAGCGGATAGTTCACCCTAATACTTAAATTCTGTCCTGATTAACTCAACCTGTTTGAGTGTCttgcttttgttgaacacaaataaagatattttaggaATACTGGTaataaaaaacagccattgacttctatagtacaTTTCTATAGTACATTATGTCAATGGgtgttttttccaaaaaaaaaaaaaaaaaagtaaagaaattcTGAATAAtttgctttgtgttcaacagaagaatgaaactcataaGCATATAGAACAACTTAAGGGTGAGGAAATATTGAGGACAtcttaattttggggtgaactatccctttaattatgtagtaaatattgttattgtaatattatttcaaataaatgatgtTCTATTTAACATTCCTAAAACAAATGCATGATCAAGTGACTTCAGACTGGAAGAATAATGCTAAAAATGTTATGaaaggaataaattatatttttaaatacaaataatgaatAGATGATTcacagttgtttattttttttctttatttttgataaaatattaTAAGTTCAACCTTAAAAAGCATAGAATTTAGCATGTGTGCGCATATCTACAGGCTTCTCTCCACCTCCGCGAATTAGCCTTTCGAGCAGCAGATGAGTGTGGTTGCCTACACCCTGCCCTCCATCTCCTGCCCTGGAGACCCGGGGATTATTGCTCCACCTTCTGTGTCAATGAGACGTCTTCCTTTCCCACATCTCAATGCACTGCTGGTCCATCACACTCACACtggagagcacacacacacgtactAAACATACTTGTGTTTGACCTGTGGAACTGCAACATGTACAAGCCAACAATTACTATATAGAGAACAGGATGTTAGATTATCATGCATAGAATATCATGCATTGTACGTTGTTTGCATTTGCctttatatttattacagttcGATATTAAGCAGTTCATAAGTCATGAACTTATTTCTGTTAATAGTCAGGGATACTCTTTTAAAGTTTATTTGGTATTCATTCAGTGTACATATCTAGTATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003331 True 2839 lncRNA 0.33 1 8202390 8205228

Neighbor

gene id symbol gene type direction distance location
XLOC_000995 grapb coding downstream 9972 8165340 ~ 8192418 (-)
XLOC_000994 FAM83G coding downstream 61255 8127675 ~ 8141135 (-)
XLOC_000993 si:dkeyp-9d4.3 coding downstream 100895 8022320 ~ 8101495 (-)
XLOC_000992 si:dkeyp-9d4.2 coding downstream 181801 8017069 ~ 8020589 (-)
XLOC_000991 CR855320.3 coding downstream 189914 8001435 ~ 8012476 (-)
XLOC_000997 syngr3b coding upstream 210755 8415983 ~ 8428761 (-)
XLOC_000998 NA coding upstream 299749 8504977 ~ 8510066 (-)
XLOC_000999 zgc:112980 coding upstream 334443 8539671 ~ 8553298 (-)
XLOC_001000 ptcd1 coding upstream 350095 8555323 ~ 8566567 (-)
XLOC_001001 NA coding upstream 373927 8579155 ~ 8587359 (-)
XLOC_000985 CR855320.6 non-coding downstream 282184 7920119 ~ 7920206 (-)
XLOC_000981 BX908756.3 non-coding downstream 358028 7771557 ~ 7844362 (-)
XLOC_000982 BX908756.2 non-coding downstream 400744 7801531 ~ 7801646 (-)
XLOC_000980 NA non-coding downstream 500534 7700023 ~ 7701856 (-)
XLOC_000975 NA non-coding downstream 648051 7545049 ~ 7554339 (-)
XLOC_001002 NA non-coding upstream 407347 8612575 ~ 8625266 (-)
XLOC_001008 NA non-coding upstream 769272 8974500 ~ 8977963 (-)
XLOC_001009 NA non-coding upstream 773677 8978905 ~ 8980671 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00150486_00160308 NA coding CI01000300 null 150486 ~ 160515 (+)