XLOC_009961


Basic Information

Item Value
gene id XLOC_009961
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26531777 ~ 26533757 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021946
AAATAATATTTCGGAGCATCTCAAGACGATCTGCATTGTAGAAAGGTGGCTGAAAAGAGAAAAGAGCCGTAGAGCATTTCATGGAGAACAGCCCCCAGACCCCACCAGTCCACCGTCCGGTCATACTCCTCCTGCAGAAGAACCTCCGGTGCTAAATACTCTGGTGTTCCACAAAATGTTCTGGTGGTGCCGCGTCCGCTCATGCCCTCCTTACACAAGCCGAAGTCGGTCAAAACCACATGACCCGCTGAATCTAGCAGAATGTTTTCTGGTTTCAGGTCCCTGTGAGCGTGTGAGAGAGATGGATCACTGCAAATCTGCTGAAAGTTTCATTATGTTCTCACTGAGCACATATGAATAAGCTAATCTGCATGATACAGGCACAGATATTTAAGAGTGTTGGTTTACCTATAGACAATTTTCAGGGAGTGTAAGTATCCTAAAGCACAGGCCATCTCAGCAGCATAAAATCTGGCTCTGGCTTCCCCGAACACCCCCTCCCTCTGTAAATGGTAAAAAAGCTGCAACAAACATAAAAGCAGACATTTATTAACACACTAATCAAACCACTGTTGGTTTACACATATTTTGAAAAGACACAGACTTAAAGGGGCCCAATTAAATGTAGTTTCAGCAGGCAGTAATTATAATACAGTATTAATAACGATAACATAGTAAAATTCTCAGCTCAAATTAACCACAATTAATTTTGTGGCCCAGtgttgtttaagaaaaaaaatgtatttataaaaattatttaaattttgtggcATTTTAATTTAGACATTTATCCCTTAACTTTCACCATTTGGGTTCACATTTGAAAATTATATAGGATATGTGCACATATAGTTTGTCAAGATAAGTggtataaaaaaactaaacataaactgaaaaattcaaatattaaaagtaaaatatatgttaaaatatgaaaaataataaaatatcacaattctAAAACAAAGCTTTGTAAATTCTATCCTTCTGTTTCCCCCACATGCAAAAAGTGTAAAGCTGCCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021946 True 1024 lncRNA 0.37 2 26531777 26533757

Neighbor

gene id symbol gene type direction distance location
XLOC_009960 NA coding upstream 20668 26509385 ~ 26511109 (+)
XLOC_009959 CR391910.1 coding upstream 35884 26494756 ~ 26495893 (+)
XLOC_009958 epb41b coding upstream 43608 26449615 ~ 26488169 (+)
XLOC_009957 trim35-28 coding upstream 85456 26439518 ~ 26446321 (+)
XLOC_009956 BX571761.1 coding upstream 119999 26411646 ~ 26411778 (+)
XLOC_009962 ptpn3 coding downstream 13395 26547152 ~ 26600624 (+)
XLOC_009963 epb41l4b coding downstream 67607 26601364 ~ 26635305 (+)
XLOC_009964 BX537166.1 coding downstream 106920 26640677 ~ 26643826 (+)
XLOC_009965 virma coding downstream 146751 26680508 ~ 26717597 (+)
XLOC_009966 rad54b coding downstream 198329 26732086 ~ 26758184 (+)
XLOC_009954 NA non-coding upstream 451061 26074711 ~ 26080716 (+)
XLOC_009949 NA non-coding upstream 571619 25958896 ~ 25960158 (+)
XLOC_009973 LO017763.1 non-coding downstream 672912 27206669 ~ 27206797 (+)
XLOC_009977 CR848817.1 non-coding downstream 881940 27415697 ~ 27415812 (+)
XLOC_009984 NA non-coding downstream 1306170 27839927 ~ 27873367 (+)
XLOC_009986 NA non-coding downstream 1515797 28049554 ~ 28050028 (+)

Expression


Co-expression Network