G237396


Basic Information

Item Value
gene id G237396
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12730710 ~ 12821913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU269296
ATAACGTATCATAATATAAAATCATTTGACAGTGGTTGTGAGTAGCCATGTATGGTTTTACCTGTGGTTACTAAGTCTCACTGTGAGAATATTTTCATTTAATCCTAATAATTATAAATAAAATAATTCTTATCAATAAGACAAAGTTATATTGTGATTTGGTGGAATTGAAAGTTAAAAAAACAGCATTTATCTAAAATAGCATTATGTATCTCATCATATGTCGTCATATCAGATTACAGAGCTTGCCAGATCAAGAAAGTATTTTCCAGTTTTGTGGTCAGCCAGATAATCTTTGCTGTGAAACTCCAATGTGTTTCAAACAACCAGCCTCATACTCACCATTTTAAGAAGTTTTGTGTTTCTGCAGAGATCAGCTTCCTATTTGGTGGAAGGCAGTTGGCCACAGTTTCTGCTCTGACCAGCTGCAGCCTTTTTTGCCATTTAGGGAAGGTTTTATCTGAAAGCGATAATACCAATTTATTAGACCCTTCTGTTGTCAGCTGATAAAGGAGCAAGCATTCTGATTTGTTGTGTTGTTAGAATCAGCTTTTGTTTTGACTGGAATGTTTCCTTAATGATCGCCGCTCATATACAGTAGATAACACTTTAGAACCTAATTCTATTCCCAGCATATTTTTATACCCTAAAATTTATAATCGTATAAATATATTGATTGCAAAGGCTAGAAATCGGCCCCGACAATCTATAAAATAGTTTAATAGTGTAAAATGGTTTAAATGCCGTATCCAGCACTCTGTGGCTGGTTTTCTTTCTACTTCAGGTTTTCTTTGATGGAGGCAGCAGCTAGATTGTAATCGCATTGCCAAACTAAAAACAGAAGCTCTTTATGAGGCAACCAATGTCTTAAGCAAAAATGCAAAACAAGACCAGGGCTAATTTGTGGGTCTGTGCTGCAATTTCAGATTTCATCAGACAAGGATACAGATTATCACTATTAATGCATTTCAAAAGGGTGCATATGACAACATCATAACAATAAATAAAATATATTTATTTTCTCAAACAGAGTTTCAGTATTTGGCACAAAAGACAGTGTTTGGCAATGATACAGTGTTACAGGCACTACAGTAAAATAAAGCACTTTGGAAATTATTCTGTAAACGAAACCAAAATGTCCACAGAAGATTAAGAAACATTCACTCAGAATTCTTTTGTTTTACTTTTGTGAAGTGGAGGGACTGTAAAGAGATAAGATGAACAGAATCTACTGGCGCTTTGCAACCCCTTTTTGAGAAATAAAATATGAACTTTAACCATAATTTACAGTATAAATGTGGATATTTAATCTAAACATTCCAAATCAAATCCCGTGATTAAATAGCAGTAAAGTTACATGAACCAGAGTCCAGAAATACAGAAAAACCACAACCAACACCTGGTCAATGTCTTAACAAATATACAATATAAATCGACTACTAATCTAAATATGAATACGATGACATCTAAATACTTGTTTTATTTGTCTGACACATCTACATGACTAGAGATAACATAGTAACACGTTTAAAAGTGTGAAGTTCTACAAACTTGTTAAAAAGTGGCATTGAAGGGAGTGCGATTCACCATCAGTCCACTAGAGAGGGACAACCAGCACAAATTATTTAAGGAACAGTTCACCAAAAAAAATGACAATCTTGTCATAATTTACTCACCCTCATCATTTTAAGTTTATATGATGTTTTTCTTATTTTTCATTTAAAAAAAAAAAAGTGGGTTTCAAATAACATGGGAGGTGAGATAATAATGACAAAACTGTCATTTTGAACTTTTTTTAAATATATATTTTAAATATGTTTATATTTCAGTGATTTTGAGATGTGAGGTTCTCATTAAGAAATCACAAACCTCATTTTCTAACAACTGTGTCACACAGTATTGGAATCAGAGAAATGCACTGATGTCCACTGCATGCATTTAGTCCAGATTGTTTTAACAGTAACTGCACTAACAGTGAAAGGCACAGCGAGAGAAATCAAGCCCTTGATACACATCTAGTCTGATGCATTAAGGGTTCTGAATGAAGGATTTGTTGTAAAGTGCTCTCAAAACGTGGAGACTGGTAACCAGCTGAAAGTACCAGCCTTGATAATCTAGGTGGCTTTAGTCCATTCGTTCTGAGAAAAACTAAGTGAGGATGTGGCAACCCCTGGTTTAATGCAGCGCAGGGTCTCTGATCCTCTACAGCCACTGAATTAAACTGAAATGAATACGAATAATGAAAAAGATCAGAGAGCCTTCACTGTGTCTTGAAGCAGAGGCCACACAGGGAGGATTATTACTGTAAAGTGGCAGAAACGTGGAATTAGCAGGCACACTTGCTCTGGTCTGTGTCCCGCGGCTCTGCCAGGTCGTTGGTGCTGTGACCGTTGGTTCGAACGGTTCCGTCAGGTATCCAGGATTTGTCCACGCATCGCTCCATGCGCTTCATGATCAAATCCAGCAGAACCTCCACGGCATGGCTCACGTTCTCACCGTTGGCAGCGCTTGTCTCA
>TU269298
GTTTTTTTTTTTTTTTTAACAATAAATAAAATATATTTATTTTCTCAAACAGAGTTTCAGTATTTGGCACAAAAGACAGTGTTTGGCAATGATACAGTGTTACAGGCACTACAGTAAAATAAAGCACTTTGGAAATTATTCTGTAAACGAAACCAAAATGTCCACAGAAGATTAAGAAACATTCACTCAGAATTCTTTTGTTTTACTTTTGTGAAGTGGAGGGACTGTAAAGAGATAAGATGAACAGAATCTACTGGCGCTTTGCAACCCCTTTTTGAGAAATAAAATATGAACTTTAACCATAATTTACAGTATAAATGTGGATATTTAATCTAAACATTCCAAATCAAATCCCGTGATTAAATAGCAGTAAAGTTACATGAACCAGAGTCCAGAAATACAGAAAAACCACAACCAACACCTGGTCAATGTCTTAACAAATATACAATATAAATCGACTACTAATCTAAATATGAATACGATGACATCTAAATACTTGTTTTATTTGTCTGACACATCTACATGACTAGAGATAACATAGTAACACGTTTAAAAGTGTGAAGTTCTACAAACTTGTTAAAAAGTGGCATTGAAGGGAGTGCGATTCACCATCAGTCCACTAGAGAGGGACAACCAGCACAAATTATTTAAGGAACAGTTCACCAAAAAAAATGACAATCTTGTCATAATTTACTCACCCTCATCATTTTAAGTTTATATGATGTTTTTCTTATTTTTCATTTAAAAAAAAAAAAGTGGGTTTCAAATAACATGGGAGGTGAGATAATAATGACAAAACTGTCATTTTGAACTTTTTTTAAATATATATTTTAAATATGTTTATATTTCAGTGATTTTGAGATGTGAGGTTCTCATTAAGAAATCACAAACCTCATTTTCTAACAACTGTGTCACACAGTATTGGAATCAGAGAAATGCACTGATGTCCACTGCATGCATTTAGTCCAGATTGTTTTAACAGTAACTGCACTAACAGTGAAAGGCACAGCGAGAGAAATCAAGCCCTTGATACACATCTAGTCTGATGCATTAAGGGTTCTGAATGAAGGATTTGTTGTAAAGTGCTCTCAAAACGTGGAGACTGGTAACCAGCTGAAAGTACCAGCCTTGATAATCTAGGTGGCTTTAGTCCATTCGTTCTGAGAAAAACTAAGTGAGGATGTGGCAACCCCTGGTTTAATGCAGCGCAGGGTCTCTGATCCTCTACAGCCACTGAATTAAACTGAAATGAATACGAATAATGAAAAAGATCAGAGAGCCTTCACTGTGTCTTGAAGCAGAGGCCACACAGGGAGGATTATTACTGTAAAGTGGCAGAAACGTGGAATTAGCAGGCACACTTGCTCTGGTCTGTGTCCCGCGGCTCTGCCAGGTCGTTGGTGCTGTGACCGTTGGTTCGAACGGTTCCGTCAGGTATCCAGGATTTGTCCACGCATCGCTCCATGCGCTTCATGATCAAATCCAGCAGAACCTCCACGGCATGGCTCACGTTCTCACCGTTGGCAGCGCTTGTCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU269296 True 2079 lncRNA 0.36 2 12819695 12821913
TU269298 False 1538 lncRNA 0.37 2 12730710 12821913

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G139327 NA non-coding NC_053124.1 CM020921.1 37559507 ~ 37559854 (+)
tiger barb (Puntius tetrazona) G127207 NA non-coding NC_056716.1 CM032085.1 17749391 ~ 17750176 (+)