CI01000055_02420414_02422942


Basic Information

Item Value
gene id CI01000055_02420414_02422942
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2420414 ~ 2423696 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_02420414_02422942.mRNA
CCAGAGATCGCTGCGCAACAGGCAGAAACAAACTACTGCTGACCATTTTTGATGGGTTCAGATGGGACTATGACAGAGATGTGGACACCCCAAACCTGGACAAAATGGCTGAAGAAGGAGTCAAAGCAGCATATCTCACTCCAGCTTACCTGACCATCACTAGTCCTACACACTTCACCCTGTTATCTGGAAGGTACATTGAGAACCACGGTGTGATTCATAACGTGTGGTTCAACACAACCACACGACAAAAAAAAGAGTACTACATGACACAGTTTGTTGATGAATACTGGGATAATGGCAGTCTACCCATTTGGATCACGGCTCAAAGACAGAAAGAAACGGTTCAAGTGAGGGAGGTGGAACCGAGAGCTTATGACTACACCAGTGAGACAGCATGGAGAGAGAACGTGGATAAAGTCATGAAGGAATGGTTTAAAGATCAAGACTTAGACTTTGTCACTTTGTATTTTGGCGACCCAGATGAGACCGGCCACAAGCACGGACTTGATTTACCTGAGCGACATGAGGCTGTCAAGAAAGTGGACCAAACTTTTCACCTGTTCGATTATGGACCTTCTGGGATGCTGTTGCCCAAAGAAGGGATGCTTGAAAAGGTTTGTCAAGCCTTGAAAGGAGGTCATCCAAACCTTCACGTTTATAAGAAAGAAGACATGCTTGCTCGACTGCATTATGCCAAACATCCGCGTATCCTACCCATCATTCTCTATGCAGACCCAGGATATGTCATCAATGGGTTTTACCCACTTCAGACCAATAAAGGGGAACAGCCTTTCTTCAGGGCAGTGGGACCAGATTTCCACAGTAACTTGTTGGTTGGACCATTTGAGAATGTCAACGTTTACCCTCTAATGTGCCACTTACTGGGTATAAAACCAGAAATCAATGATGGGTCACTGGATAACACTCAACACATGCTCATATCCAATGGAGAGACATGTGATTCTGGAGATGCACCTAAGTTGAGTCTTCAGAATGTGTTCATTGGTCTGGCTGTTGTTGCTGGAATTTTATTGCTTATGTTTGTGGTTGTTACATCCTACAACGGATATAGAAGACGCAAAATGAATCCAAAGTATGGCACAGAGCTACATTAAGACTTGTTATTGTTATTTTTGGGAACAGTTTCCTTCTGTTTAATGAAAATCTGATGTATTTCTTTACCTTTACTCTCTAACAGAGCGAAAGAAATAGGAGATGAGGATGAGATGAAAGCCGACTCCAAGCAAACATCATTTTAAGATATTTATAAGATTATAATACTGTTCAGACTTCCAATATCACATTACGGTGGTGGATCATTATTTATAATAGATACCTTTATCTCTAATGGAAGAGCACAAAATAAGCCTGTTATTTTGTCCACTGAGCTTTATGTACATTTGTTTTCAGTAGTCATCATAATACATTACCATGGCTTAAACAGCTACTGTACCATTTGACTATGGTAGGTGAACTTGGTAGGCGGTGGTGGGAAGGTGCATCATAAACTGCATTATGAAATGAAATGTGTTTTGGGGTCATGAATGTGCATCACGTGGATGCAGCCACATAAAGCAAGCATGTGCATTTCAGTTAATGAAAGCCTGGGTCAAGACCATGAAAATACCAATAACACAAGCAGACGGAAAGCATGCCTGTGGTGTTCAGACCAGGTCTTCTAGTCTACATCTGGTGGGTGTATATGAATATGGATTTCTACTGTTCTGCATAATGCTAATGAATAGAATTGAGGGACTGAAAATCTTATAAATGAAACCTATAAGTTCTGCATAGTATTATTGTGAATATCTAATATAAGTATATGCAATAGCACAATGAAATGACACATGAATGTAATACCATCAGTAA

Function

NR:

description
LOC557756 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_02420414_02422942.mRNA True 1872 mRNA 0.41 6 2420414 2423696

Neighbor

gene id symbol gene type direction distance location
CI01000055_02152005_02168439 NA coding upstream 251955 2151391 ~ 2168459 (+)
CI01000055_02060775_02077202 NA coding upstream 342928 2060578 ~ 2077486 (+)
CI01000055_02038946_02039783 NA coding upstream 380236 2038729 ~ 2040178 (+)
CI01000055_01961331_01962015 NA coding upstream 457966 1961013 ~ 1962448 (+)
CI01000055_01936268_01937799 C1QTNF1 coding upstream 482572 1936268 ~ 1937842 (+)
CI01000055_02425304_02429638 ENPP7.1, ENPP7.2 coding downstream 1608 2425304 ~ 2429719 (+)
CI01000055_02542526_02542861 NA coding downstream 118520 2542216 ~ 2544118 (+)
CI01000055_02601849_02607123 NA coding downstream 177034 2600730 ~ 2607536 (+)
CI01000055_02608904_02621376 RAB40B.L, MGC114680, RAB40B coding downstream 185208 2608904 ~ 2621462 (+)
CI01000055_02646852_02680018 GRIN2C coding downstream 220654 2644350 ~ 2680037 (+)
G238862 NA non-coding upstream 17287 2402498 ~ 2403127 (+)
G238850 NA non-coding upstream 50049 2370049 ~ 2370365 (+)
G238673 NA non-coding upstream 54189 1992402 ~ 2366225 (+)
G238825 NA non-coding upstream 113762 2304241 ~ 2306652 (+)
G238806 NA non-coding upstream 160475 2257469 ~ 2259939 (+)
G239114 NA non-coding downstream 17480 2441176 ~ 2442935 (+)
G239116 NA non-coding downstream 24622 2448318 ~ 2453971 (+)
G239117 NA non-coding downstream 32613 2456309 ~ 2462968 (+)
G239178 NA non-coding downstream 127072 2550768 ~ 2551066 (+)
G239180 NA non-coding downstream 135276 2558972 ~ 2560176 (+)
G238534 NA other upstream 751170 1668410 ~ 1669244 (+)
G237840 NA other upstream 2000482 418925 ~ 419932 (+)
G237680 NA other upstream 2399252 20902 ~ 21162 (+)
G239761 NA other downstream 1738554 4162250 ~ 4213402 (+)
G239755 NA other downstream 1830514 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 1840331 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 2741796 5162990 ~ 5166647 (+)

Expression


Co-expression Network