CI01000055_02601849_02607123


Basic Information

Item Value
gene id CI01000055_02601849_02607123
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2600730 ~ 2607536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_02601849_02607123.mRNA
CTATTAAAAGGCAGGTTAATATTTATCTTTAAATGTTGCAATAGATATGGCAGCATACAAGTTATGATTTTAGAGGGCAAGAAATTTATAAAATAAATATATACAAAAATATATATATATTCTGTATTGGTGTCAAATTTTTCAGCACTCCTTTTTTATACTAAATGGCAACAAACATATGCATTAGCTAGACTAACCAGTTGATGGTTCAACTCCAGGATTTGTAATCTCATACCAAAGTGCTGTTTTTGCTTTGTTGAGTTCATGTGGCGGTCAGCACTGAACAGGATGACAAGGACAAATGCTTGTGCTCCTTACTAGCGATGTATTTAACCTGATTCCCATCTCTGCAATTAGTTTTCTTAGTTATCTCCTCTGCTGCACTGTAAACAATGCACTTTAATCTCGATCACATTAAGAGCAACAAAGAGAATTAGAATTAAGTTCAGTGTAATGATGATCTGTCCTTTACTGCAACAGGCAGGTTGTGTTTACTTCCATCAAATCTGTATCAAAAGGGTTATGCATGCTTTTGTCCCACACTAACTTCATATAAGCAATTAAAAAGCATTAAGGGAAATAAAAGGATTTGACTTTAACGAGACACCCTGAACAAACAAAGGTTCAGATATAGTGCGTGCGATTGTGTTACAAAAGATCTAGCATTAAACTGATCACTTAATTCTACCTAATCTGTCTTACCTTGCTCAAGCCATGTAAGGATATGCACTCAAGTGACTACAGCAAAACCACGCAGGCAGGGTGCATCCTATCCTATCGCTTGCTGCTGGTTTATCAACATGATGATGAACTCTAAATGACTCTAAAATAACAAGTTCCTATGTACAGTAATTGCTGTCAGCTTTTAATAAGCTTTTCAGCATTGAAAGCAATTTTATATGCAGCACAAATTAGTAAACAGAATATTAGGAAATGCTGAAATGTTCCAACGTAAATGTAATATCCATGCCCATGTTTTCAACACAGACGAACAAGCAGAAACATAAAGAAGGTAACTACATAAGCACAGCAAATGAGGCTATAATAGAAAACAAATAAGCTTTAAAAGCATTAGTATTTGCTTAATCTAAAGTCATTCATCCAGATAACAACCAGATAATGGCATTTCTTACCAGTAGAGGAGTGATAGCCCGTCAAAGTGTTCTGCCTCCACTGGGAGCAGTGCCATTGCAGGTCCACAAGCAACTGATGAAGTATTGTAAAGTCTACGATATCACGGGGTTGGGGAAAGCGGTGGTTCAAATCAGGAAGGCTCAAAACTTGACACCGGGCTGTGATGTGGAACGAGGGGACGTCGTACCAGGAGAAACTGCGCTGGCTTTTTATAAGGCACGGAACCCCACAGACAAACCGGTGATAGGCATTTCAACCTACAATGTTGTACCTTTTGAGGCTGGACAATATTTTAATAAGATACAGTGTTTCTGTTTCGAGGAACAGAGGTTAAACCCACATGAGGAGGTGGACATGCCTGTATTCTTCTACATTGATCCAGAGTTTGATGAAGACCCCAGGATGGCACGAGTAGACAATATTATACTCTCATACACCTTTTTTGAAGCCAAGGAAGGACAGAAGTTACCAATCCCTGGTTATAGCTAATTGTGCTTTATTCAGAGACTTTTAATCAGAATTATCTTCAGGAGATTGTGTTCTGTAATCATTTTGATAATGATTACTGCATGTGATAATGTCTGATGTCTGAATAGTCTGAATCAAATGATTATAACAAAAATTTAACACTGATCAAGGCTGATCATCTGTCTATGAATTTTATGGTTAAAACA
>TU271374
GTCGTACCAGGAGAAACTGCGCTGGCTTTTTATAAGGCACGGAACCCCACAGACAAACCGGTGATAGGCATTTCAACCTACAATGTTGTACCTTTTGAGGCTGGACAATATTTTAATAAGATACAGTGTTTCTGTTTCGAGGAACAGAGGTTAAACCCACATGAGGAGGTGGACATGCCTGTATTCTTCTACATTGATCCAGAGTTTGATGAAGACCCCAGGATGGCACGAGTAGACAATATTATACTCTCATACACCTTTTTTGAAGCCAAGGAAGGACAGAAGTTACCAATCCCTGGTTATAGCTAATTGTGCTTTATTCAGAGACTTTTAATCAGAATTATCTTCAGGAGATTGTGTTCTGTAATCATTTTGATAATGATTACTGCATGTGATAATGTCTGATGTCTGAATAGTCTGAATCAAATGATTATAACAAAAATTTAACACTGATCAAGGCTGATCATCTGTCTATGAATTTTATGGTTAAAACAATAAAATAAGTTCTTATTTTTATACACCTTCAG
>TU271375
GTCGTACCAGGAGAAACTGCGCTGGCTTTTTATAAGGCACGGAACCCCACAGACAAACCGGTGATAGGCATTTCAACCTACAATGTTGTACCTTTTGAGGCTGGACAATATTTTAATAAGATACAGTGTTTCTGTTTCGAGGAACAGAGGTTAAACCCACATGAGGAGGTGGACATGCCTGTATTCTTCTACATTGATCCAGAGTTTGATGAAGACCCCAGGATGGCACGAGTAGACAATATTATACTCTCATACACCTTTTTTGAAGCCAAGGAAGGACAGAAGTTACCAATCCCTGGTTATAGCTAATTGTGCTTTATTCAGAGACTTTTAATCAGAATTATCTTCAGGAGATTGTGTTCTGTAATCATTTTGATAATGATTACTGCATGTGATAATGTCTGATGTCTGAATAGTCTGAATCAAATGATTATAACAAAAATTTAACACTGATCAAGGCTGATCATCTGTCTATGAATTTTATGGTTAAAACAATAAAATAAGTTCTTATTTTTATACACCTTCAGAAACAAGCTATTACCCGTTTTGATATCAAACATCTAAACTGTATATGCAACATTGGTGAATTTGTGTCAATATAGTCTTTAGGACACTAGAGGG
>TU271376
GTCGTACCAGGAGAAACTGCGCTGGCTTTTTATAAGGCACGGAACCCCACAGACAAACCGGTGATAGGCATTTCAACCTACAATGTTGTACCTTTTGAGGCTGGACAATATTTTAATAAGATACAGTGTTTCTGTTTCGAGGAACAGAGGTTAAACCCACATGAGGAGGTGGACATGCCTGTATTCTTCTACATTGATCCAGAGTTTGATGAAGACCCCAGGATGGCACGAGTAGACAATATTATACTCTCATACACCTTTTTTGAAGCCAAGGAAGGACAGAAGTTACCAATCCCTGGTTATAGCTAATTGTGCTTTATTCAGAGACTTTTAATCAGAATTATCTTCAGGAGATTGTGTTCTGTAATCATTTTGATAATGATTACTGCATGTGATAATGTCTGATGTCTGAATAGTCTGAATCAAATGATTATAACAAAAATTTAACACTGATCAAGGCTGATCATCTGTCTATGAATTTTATGGTTAAAACAATAAAATAAGTTCTTATTTTTATACACCTTCAGAAACAAGCTATTACCCGTTTTGATATCAAACATCTAAACTGTATATGCAACATTGGTGAATTTGTGTCAATATAGTCTTTAGGACACTAGAGGGCAGCATTTGTGCATGTTTATATTAGTTTGTGTACATGATTCTAAACTTAATTGCACAGGAGTGAAAACAATAATGTGTGTTTTGCCACTTGTTGGTTATGG

Function

GO: NA

KEGG:

id description
K02258 COX11, ctaG; cytochrome c oxidase assembly protein subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_02601849_02607123.mRNA False 1808 mRNA 0.37 4 2600730 2607308
TU271374 False 527 lncRNA 0.37 2 2606642 2607341
TU271375 False 621 lncRNA 0.36 2 2606642 2607435
TU271376 True 722 lncRNA 0.36 2 2606642 2607536

Neighbor

gene id symbol gene type direction distance location
CI01000055_02542526_02542861 NA coding upstream 57820 2542216 ~ 2544118 (+)
CI01000055_02425304_02429638 ENPP7.1, ENPP7.2 coding upstream 171011 2425304 ~ 2429719 (+)
CI01000055_02420414_02422942 NA coding upstream 177034 2420414 ~ 2423696 (+)
CI01000055_02152005_02168439 NA coding upstream 432271 2151391 ~ 2168459 (+)
CI01000055_02060775_02077202 NA coding upstream 523244 2060578 ~ 2077486 (+)
CI01000055_02608904_02621376 RAB40B.L, MGC114680, RAB40B coding downstream 1596 2608904 ~ 2621462 (+)
CI01000055_02646852_02680018 GRIN2C coding downstream 37042 2644350 ~ 2680037 (+)
CI01000055_02729512_02734190 NAT9 coding downstream 122204 2729512 ~ 2734772 (+)
CI01000055_02760466_02767918 NA coding downstream 152803 2760111 ~ 2767934 (+)
CI01000055_02808336_02822398 GABRP, GABRZ coding downstream 201028 2808336 ~ 2822782 (+)
G239185 NA non-coding upstream 36206 2563630 ~ 2564524 (+)
G239180 NA non-coding upstream 40554 2558972 ~ 2560176 (+)
G239178 NA non-coding upstream 49664 2550768 ~ 2551066 (+)
G239117 NA non-coding upstream 137762 2456309 ~ 2462968 (+)
G239116 NA non-coding upstream 146759 2448318 ~ 2453971 (+)
G239228 NA non-coding downstream 109809 2717117 ~ 2717394 (+)
G239235 NA non-coding downstream 137772 2745080 ~ 2745816 (+)
G239237 NA non-coding downstream 140931 2748239 ~ 2748474 (+)
G239238 NA non-coding downstream 141249 2748557 ~ 2748883 (+)
G239239 NA non-coding downstream 141857 2749165 ~ 2749377 (+)
G238534 NA other upstream 931486 1668410 ~ 1669244 (+)
G237840 NA other upstream 2180798 418925 ~ 419932 (+)
G237680 NA other upstream 2579568 20902 ~ 21162 (+)
G239761 NA other downstream 1554942 4162250 ~ 4213402 (+)
G239755 NA other downstream 1646902 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 1656719 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 2558184 5162990 ~ 5166647 (+)
G240099 NA other downstream 2929210 5525472 ~ 5544153 (+)

Expression


Co-expression Network