CI01000055_03518013_03528878


Basic Information

Item Value
gene id CI01000055_03518013_03528878
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3517554 ~ 3528878 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03518013_03528878.mRNA
TGAAACCAAAGGAATAATGAATCGATCCTTCACTCAGACTTTGATAAGACCCAATCTCCCCCTGAGGAGACCTGCGACTGGACCGAGTTCATTTACTCCTAGAGGACCAGCACCAGCAATTCAGGATCTCGCTCAAGAACATCTGCTAGGAAGTGACATTCTAGATGATCCTAAGAGTGATGCTGTCAGAAAGGAGAATGTGGTTTCTGCAAAGAACAGTCAGAATACAGCAGGATCCATGTTGGGCCCACTGGTAAAGTTGTGCAATTACTGCAGTCACCAGGCTTGTCAGACTCAGGATTGGAAAGCTCATCGACATGTCTGCAAACCCAGCATCTCAGAAGTTACCAGTGAGAAAATTAAGGAATCCACAGCTATGCCATCTGGAAATGGACTTGGTGGCCTTCAAGCTAAGGAGATCTGTGTTGACCTAAAGCCAAAGAGAATGTTTCGAGGTGATTTGCGCAAGAATGTTGTTTCCAAAGGAGCTGAGATACAGGGTACAGTGATTGACCTGAGGAACCCTGGGATGTTCTCCATCCACCTGCAGTCAATTGAGATGATTGAGTCCCTGAAAAACATCACTGCAGAGCTCCAGAAGGCCTATAGTACTTCATTTGCTCCTGAGTACAAGCCTGAAATTGGGGAGCTCTGTGCGGTTAAATTTTCTCTTGATCGGAACTGGTATCGAGCTGAGGTCCAGTCAGTTGATGTGGCCCGCAAAACTGCTAATGTATTTTACATTGACTTTGGGAATGAGGAGAATGTGACACTTGACAACATAAGGCCTCTCTCTGACAATATCGATGCTGCACCGCCATTTGCTTTGCAGTGTTGTGTTGCTGGGATAAAGCCTGTGACAGGAAGTTGGACAGGAGAATGCACTATTGCTGTTAGGCAGTTAATTACTGGAAAGAGCCTCACTTTCACAGTGTTGGACATCATGAATGATGGAGCTCTGCTTGCTGTAGATTTTCCTCTTAGCACGCTTGGTAAATACATGAGCACTTTCCTGATAGACCAGGGCTATGCTATAAAGGACAATGTTCCTGTCAAACCACAGACTGAACACAACATCAATTCCTTGCTGACGGCGTCCTTTGAAAACTTCAAGCGCTTGTCTGGAGGAAAGAATGAGAACTCTGAAGCCAGGCCTCCAGAGCCGTTGACTCAGGGAGTGGGTGACACATTCACTGCAGTGGTCACCCACCTCCAGTCTCCCTCAGAGATCCTCTGTCAGAAGCTTGAAAATGCCAGTGTAATCCAGCAGTTGCAGTTGAATTTAAGGGAGCACTGTTCAAACACTCTGGCCAGTGAGAACTTCAGGCCTGCGCCAGGAACTGTCTGCTGCTCACTGTTCTCAGAGGACAACCAGTGGTACAGAGCTAAAGTTCTGGCATATTCCTCTGAGGATCGCGTGTGTGTCGGATACATAGACTTTGGAAACTCTGAGGAAGTTGAGTTGAATCGCCTACGACCAATCAACAAGGAGCTGTTGGCTTTGGCAACACAAGCAATTCCCTGTTCTCTGGCAGGTATAAAGTCTCCAACAGGCGACTGGTCAGAGGAGGCCATTTTGATGGTGAAACGTCTGGTCTGCAACCGCTTCATTCGGGTTGAGATTCTGGGTAAGAAGGATGGTAGGGCTCTGGTGTCCATGATCGACGAGTCCAGTGACCCTCAGACCAATGTCGCTGAGTTGTTGGTTAACATGGGTTATGCTGCCATTGAAAGTTTGGAGACGGAGAAGAATGAACCAGCTCAGGCATCCTTCCCTGAAATGCCTCCCCTCAGTCTGCCTGTTGTTGAGAAAATGGAGTGGACTTGTGCTGAACTTCCATTCGATGGTCAAAAGGTGGAGCTGGTGATCAGTACTCTGAAGAGCCTGGATGAATTCTACTGTTACAACTACAGTATCGATTCACATGTCCTGACAGAGCTGTCCTATGAGCTCAAAAAGCATTGTGAATTGGACAGGGCGCCCTTTACACCAACTGTGGGAGAACCATGTTGTGCTCTCTTCACAGGAGATGCCCAATGGTACAGGGCCATGGTATTAGAAGTGTGTGGAGAGAGTAAGGCTAGAGTTTATTTTGTGGACTATGGGAACTCCTGTGAGGTGGAGGCAGCACATCTGAAGGCCATCACTCAGAGCCTGCTCAAACTGCCTTTCCAAGCGATACGCTGCTGGCTTGCAGGAGTAGAACCAGTGGAGGGTCAGTGGAGTAAAGAGGCAATGCACAAGTTTCGGGCTCTTTGTGCCGGTCAGCCATTGAGTGGCAAAGTGCTGTCCATCACTGAGAAGGGTTATGGGGTAGAGCTGCAGAGCGCTGGACAAAGCATTGCTGCTGTGCTAGTTTCTGAGCACCTGGCTAGAGCTTGTGGACAGGTGAAACAGCCTCCACTGCAGCCAACTAAACCTTCCAATCAGATTGAGGATCTGCCCACTCTAAAACCCATTGATCAGAATCCACCTGTTGAAGAGCCTTTGAAAGTGAAGAACAATGAAGCTGCCAGTGCCCCAGAAGATTTAGCCGTATCAAGTGGCTCTTTTCCTTTGAACTGGAAGACGTTGGAGCTGCCTTGCAGTGAGACGTTCCAACCAAGAGTGGCAGCAGTGATCAGCCCTAGTCTCTTTTACATAATGAATCCTGGACAAGTGAACGTAGAGGGTCTGAAGGCTGTTATGACTGATGTTGCGAAATACTGCAGCAAACAGCCAATCCCCAATCAGTGCCACCCTTTACCAGGAGCTGCCTGCTGCGCACAGTTCTCAGGTGACAAAAATTGGTACCGAGCCGTTGTGTTGGAGGTGACGACCAAGCATGCGCATGTAATTTACGCTGATTATGGAAACATGGAGACAGTCCCTGTCTCTAGTATCCTTCCCATCACCAAAGAACTTCTCCAGCATCCATTTCAGATCGTCAGGTGTTCACTGGCAGGTAAAGAGCACTTTCCCACAGTGTGGCCCACTGAAGTTTTGGAACTCTTTGGGATTCAGTTGAGTGGGGGCGTCCTGGCAACACTGCAGAGCTTTGATGGGACCTCCAACCTGCTAACCCTTACCCAGCAGTCAGGTCAAGCTGACAGAGACATTAATTCCATCATCCTTGGAGCTCTGCAGAAAGGACAGAGCAAGGCTAACTCAAAGCTGCCTGCCACTGTCATTGAGAAGAAAAAGGATATAGATCAGAGACGGGCACAAACTGTCAGCTCAAACAAGCCTACAGATCAAACTCCGTCTGCGGACGTTAAGAAACCTGACCTGGAAGTTCAAGCCCTGCCTTTAAGTGCCAGCTACAGGGTTGAGGAACCAGGTGCTGTTCCACCTGGTGTTCTCAGCTGTAACTCAAAGGTGTTATTTAAAAGAAGCCTTGTCATCATATCCAGGCAAGCAGTTGTCAAACATTTATTATGTCTGATTTCAGAAAACATGCCCAAGACGACGACGGCTACAGTGGAATGCACTGAGCCACAAGACATTATAAGCTCAAAGGGCAGCAGTGCACGACCTGAGCCTCTGAGTTACAGCTCCAGAGAAACTCTGACACTTCAGTACCTGCGCTGAGAACAGAACGGAGAGGTGAGACACTCATTATGAATAGAAACTATCCGACTTTTAACTTGTCTAGCTTTAAATAGAAATGTTTGAAGTTTTCATTGAGCTAAAGTCTGTTATTCCGAAACTTTTAAGCTCAAAATGGTCGGTGCAGCGGCGCTTGAAATATAACCGATTACAAGAGTGTAACTTTAAGATCTTGCACTGTCACGGAGTATTACTGTACTGTAGGTTAATGAATCGTTTTAATAGGGAAGTTAAAATTTTGTTATACACATTGGGGAGTTATTGTAACTGAAATTTAAGATTCATTTTACCTGGATTAAATCGACTTTGTTTACCATAAACAAATCCTAGATTTTTTTTTTGTTTTTTTTTTTTGGTGAAACATTGTGCGACAATGAATGAAAAGTTTGTTGTGAAAATGGACGAATACATTGTGCGACAGTCAGAATACTAAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03518013_03528878.mRNA True 4030 mRNA 0.46 24 3517554 3528878

Neighbor

gene id symbol gene type direction distance location
CI01000055_03498800_03512565 VWA2 coding downstream 4989 3497883 ~ 3512565 (-)
CI01000055_03480523_03482073 NA coding downstream 35333 3480211 ~ 3482221 (-)
CI01000055_03367394_03368952 NA coding downstream 148563 3366054 ~ 3368991 (-)
CI01000055_03348848_03351995 TRUB1 coding downstream 165549 3348584 ~ 3352005 (-)
CI01000055_03242747_03342954 ATRNL1, ATRNL1B coding downstream 174180 3241225 ~ 3343374 (-)
CI01000055_03574677_03575939 ADRB1 coding upstream 44458 3573336 ~ 3575939 (-)
CI01000055_03585354_03604468 NHLRC2 coding upstream 55202 3584080 ~ 3604468 (-)
CI01000055_03616564_03618430 NA coding upstream 87677 3616555 ~ 3618430 (-)
CI01000055_03626294_03640787 NA coding upstream 97312 3626190 ~ 3640787 (-)
CI01000055_03643253_03646423 NA coding upstream 114296 3643174 ~ 3646423 (-)
G240885 NA non-coding downstream 22690 3494200 ~ 3494864 (-)
G240881 NA non-coding downstream 64052 3453287 ~ 3453502 (-)
G240878 NA non-coding downstream 66700 3450642 ~ 3450854 (-)
G240877 NA non-coding downstream 67020 3450285 ~ 3450534 (-)
G240876 NA non-coding downstream 67539 3449726 ~ 3450015 (-)
G240884 NA non-coding upstream 34935 3563813 ~ 3565842 (-)
G240949 NA non-coding upstream 130638 3659516 ~ 3665515 (-)
G240950 NA non-coding upstream 137428 3666306 ~ 3666603 (-)
G240954 NA non-coding upstream 148357 3677235 ~ 3680938 (-)
G240959 NA non-coding upstream 157184 3686062 ~ 3686286 (-)
G240825 NA other downstream 299960 3216174 ~ 3217594 (-)
G240723 NA other downstream 768202 2748835 ~ 2749352 (-)
G238932 NA other downstream 1198500 2311659 ~ 2319054 (-)
G238867 NA other downstream 2223031 1281108 ~ 1294523 (-)
G238481 NA other downstream 2252746 1263634 ~ 1264808 (-)
G240975 NA other upstream 188773 3717651 ~ 3733995 (-)
CI01000055_03918168_03965674 TCF7L2 other upstream 382424 3911302 ~ 3966460 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other upstream 1214828 4743706 ~ 4764067 (-)
CI01000055_05338403_05341971 NA other upstream 1805407 5338403 ~ 5341971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location