CI01000055_03532706_03537026


Basic Information

Item Value
gene id CI01000055_03532706_03537026
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3531374 ~ 3537194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03532706_03537026.mRNA
GTATAAATGCAATCAGTTTGTACACTTTTTCTTTCATCTACTTGATCATGTCGAAATGTGAGGAGTTCAAAAAGAAAAGAAAAAACTCTTTGTTAGACTTCATTGTTTACTTTAAATAAGTAAACATGTACATTTCTTACAGCAATGTATTTATTTTCACTGAAGCCTTATTGCGAACATGTCACTGAAGTTCTGGCCAAAGCATCTGCCATCATATGACAAAACCTATATCAGATTAAACAGCAGAATAACATAAGTATGATAAGGTATGTATCAGGCTAAAGTATTTTAATTTTGTCAGTCCACTTTTGCGCAGGAGGAAACCTGTGCTGGGTTTTTGTTTAGCCAGAAAAACCAGCTGTTCCACTATGTGGCAGTGGTGGTTGCAAAACAGCACATATGAATGGCAGTAAATGGATGGTCCCATTGGAAAGTGTTTAAAGCCTAGTTTTAAAGGTGTTCAGAAAGAGGTAAGAGAGATTTAATCCACATTTGCGTCAGTCTTGTTGTGACTTGATGTCAGTTTGCTTTTTAGAGTTGATTGTGCAGAAATGAACTCAAATAGCAGTTATTACAGTTGGGTGAACAGGAAGTATGATCTTCTTTAGCAGTTTGCTTGTGTGCAGTAAAGTCAGCAAAGTATTTAATCTGCACAGATATAACGCTGGAATCAAGCACAGATATTGTTGCCTCAGATACTACAGGAAATACACATTTAAGTGTTTATTTTATTATGTTTTATGTATTTGTGTCTATAGATTTCAATTACAATATATCTTTAAAATAAAGGGTTTTTCTCATGTTTTGAGCCAGAAGTCTGTTCAATAGCACTGACATACACTTAACTCTTCAGCTGTATTCCTATTTATATTCTGAAGGTTTTTACAGATCAATCTAATATATAACACGTTATCCCTAAAACATGGTGACATTTTTTTCTACCTGTTGGCAGTATTTTTTCTGGTTTATGGAGTGATAATGAAATATGCAAAAATCCGCTTCAATCTGTAAAAACCTTCAACGCTGATGTCAACAAAATTCATTTTGAACCTGACTTTATCCAATGCTCAAATTTCTGTTTTGGAGATTTGTGCAAATTTGTGCATATTTAAATAATAATGCCTCATTTGCATATTAAAACATAATTTTAGAAAACTTGAATACAATGTACTATACAGTCTTAATGTACTGTGATAAATCACCTCGGGAAGTATATGGTGACATATTAGTTAAACTCTTTACCCTTTTTGTAATATCAATTCTATACTTTGAAATAAAGTCATGATTTTGCACATACAGGTCAAAGGTAAATCTACTGAAATCCACTAAACAATGAAGAGGCTGAACAGAAAAAAGACCATCGATTTAGTGAAAGAACTAGACGCCTTTCCTAAAGTTCCAGAGAGCTATGTTGTAACATCAGCTTTTGGAGGCACAGTGTCACTGATTGTTTTCATCCTCATGGCACTTCTGACGATATCAGAGTTTCTTGTGTACCAGGACTCATGGATGAAATATGAATATGAAGTAGACACAGATTTTACCAGTAAATTGAAGATAAAAATTGACATCACAGTTGCCATGAAATGTGAAACGGTGGGTGCAGATGTGTTGGATATTGCCGGCACTGTCATTGCATCAAAGGAACTTAAATATGATCCTGTTAGCTTTGAGCCCTCTCCACAGAACAAAATTTGGTACCAAAATGATTCTGCATCCGAATCCAAGGATGCATGTAGGATACATGGACACATCCATGTCAGTAAAGTGGCAGGGAACTTCCATATCACACTAGGCAAACCAATTGATACTATCAGAGGTCATGCCCATTTTGCTGCATTAATCAAAAACGAAGCTGTATATAACTTCTCACATCGAATAGACTATTTGTCTTTTGGAAACGATGTTCCTGGACACATCAATCCCCTTGATGGCATGGAAAAAATTACATTAGAGCAAAACATGCTGTTTCAGTATTTTATCACAGTTGTTCCCACCAAGCTGCACACATCAGATGTTTCAGTGGACATGCACCAGTTTTCTGTTACAGAAAGGGAGCGGGTTGTAAGCCGAGAGAAAGGCAGCCATAGTGTATCTGGGATCTTTATTAAGTATAAACTGAGTCCATTAATGGTGAGGGTGAGTGAGGAGCATATGCCTCTCTCTGTGTTTCTAGTGAGATTGTGTGGCATCATTGGGGGAATCTTTTCAACTTCAGATCTGCTTCACAGATTGATTGGGTATTTTGTTGACATTATCTGCTGTCGTTTTAAACTTGGTGCAAATCAGTCCATGGAGAAACTCTTCAGAAAAGTCATTTGGGCCGATTTGGCTCCCCCTGTCGGCGGTATTTGATCCTGCGTTCTAGCTAACTGCTTGCTGGCCATCTCGGTGTTCGTAATTCTTCGCTATCAGTGCGTTCAGGGGCCATATTGTTGATGTGTCACCTCGGGAGGAGATCACTCACACGGACTTGACACTCACTATTTATCACGGCAGCTGGTGTATGGCATTTTAAATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03532706_03537026.mRNA True 2523 mRNA 0.37 12 3531374 3537194

Neighbor

gene id symbol gene type direction distance location
CI01000055_03482922_03497329 AFAP1L2 coding upstream 33758 3482442 ~ 3497616 (+)
CI01000055_03471384_03476628 NA coding upstream 54519 3470754 ~ 3476855 (+)
CI01000055_03453919_03456503 NA coding upstream 74726 3453330 ~ 3456648 (+)
CI01000055_03392185_03445744 ABLIM1 coding upstream 84685 3392185 ~ 3446689 (+)
CI01000055_03194041_03223541 GFRA1B coding upstream 307813 3193037 ~ 3223561 (+)
CI01000055_03539420_03563869 CCDC186 coding downstream 1954 3539148 ~ 3563895 (+)
CI01000055_03604945_03612832 DCLRE1A coding downstream 67751 3604945 ~ 3613140 (+)
CI01000055_03653282_03656353 NA coding downstream 116014 3653208 ~ 3656423 (+)
CI01000055_03667192_03685378 NRAP coding downstream 129542 3666736 ~ 3685893 (+)
CI01000055_03717618_03733174 THBS2, THBS2B coding downstream 178859 3716053 ~ 3733597 (+)
G239535 NA non-coding upstream 13244 3509117 ~ 3518130 (+)
G239526 NA non-coding upstream 183838 3347268 ~ 3347536 (+)
G239499 NA non-coding upstream 211914 3316914 ~ 3319460 (+)
G239509 NA non-coding upstream 224200 3306896 ~ 3307174 (+)
G239546 NA non-coding downstream 43707 3580901 ~ 3581110 (+)
G239565 NA non-coding downstream 87589 3624783 ~ 3625005 (+)
G239598 NA non-coding downstream 167830 3705024 ~ 3705225 (+)
G239599 NA non-coding downstream 170273 3707467 ~ 3708004 (+)
G239646 NA non-coding downstream 332538 3869732 ~ 3925859 (+)
CI01000055_02542526_02542861 NA other upstream 987256 2542216 ~ 2544118 (+)
G238534 NA other upstream 1862130 1668410 ~ 1669244 (+)
G237840 NA other upstream 3111442 418925 ~ 419932 (+)
G237680 NA other upstream 3510212 20902 ~ 21162 (+)
G239761 NA other downstream 625056 4162250 ~ 4213402 (+)
G239755 NA other downstream 717016 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 726833 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 1628298 5162990 ~ 5166647 (+)
G240099 NA other downstream 1999324 5525472 ~ 5544153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004804 si:ch211-225b10.3 coding NC_007123.7 CM002896.2 30360184 ~ 30367008 (+)