CI01000055_03539420_03563869 (CCDC186)



Basic Information


Item Value
gene id CI01000055_03539420_03563869
gene name CCDC186
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3539148 ~ 3563895 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000055_03539420_03563869.mRNA
CTATTAATGGCAGTATCATGACAGGAGGTGTAACGAGACTGTTCACACAAAAATTGTACACAACATCCTGGTGATAGATGGAAATCTAATAATGTAAAATAGCCATATAAATGTGTCCTGGTCATCCCTTGATAAAAATGTTTTATGGTGGCTTCTTATTGTTGAAAATAAAAGTCACGTTTTTAGTAGGCAGTTGCAATGTTTTGAGTTTTACATGCATGTTAGTCACTTGTGTGTATTGTGTTTTCCAGTGCCAGTAGCTGAAGGAGATCATGGAGCCGTTGGATTGTCAGAGTGAACTGACCCCTGTCTCCCAAAGTTCAGAGGACAACATGGTTCCACAAGGGTCAACCGATGTCCTCAGAAATGAGGGTGAACCTGTTTTAAAAGAACGGGATGAAGACACTGAGCTGGACAGTCTTGAGCTGGATGCTACTCTTTCAGGTCGTGTGGTCAGAGAAGATCACACAGAGGTTCAGCAAGAGGAACGACCTGGAGAACAAGCACAGGGTGATGGGAACACTAGCTGTGACAGTGGAACAGCATCCATTGACGATGCCAGAACTCCACCAGCTGTCCACGACAGTGTTGTAGAATCACTTCCCGCTGTTCTTGATGGAGAACTCGGATGTTCTGACTTTGAGGAACCAGCGGGCGTGGTTCCAGAATCAGAAGGTGGGACTCAGAATGAGGTAGAGGAATCTTCTCTATCTGTTCTGAATGGGACAGATGATTTTTCATCCACAGAGTTTGATGCATTCAATGGGCAGACAGAACTTAACAGAACTCCTTTGACTCCTACGCCAGCTGCTGAGGGTGAGGAACTGCCAGATGTTGTTTCAGTACCCCAAAACTCACAATCTAACTCCAACATGAACCCATATGACACGGACTGCAGCAGGAAGCTGTTGTGTGAGATCCAGCGCTCTCTGTCTCAGGAGTCTCTGCTGGATGAGCTGGAGGATGAGCTGTTGAACAGTCAGTCAGAGGGCGTCCGGAAGGGAAGTCCTCTCAATGGGCTTCAGAAGGACCAGAACTCCATGGCTTTATTTGAGAAGTGTGTACAGTACAAGTACTCTCAACAGGAGAAAGCCATCAAGAGGTTACTTGATGAGAATAAGAAACATCAGGAGCTGATTCTGGGCATCTGCTCCGAGAAAGACAACATGAGGGATGAGCTGAAGAAGAGGATGGAGACGGAGAAACAGCATCTTTTCACCATTAAGAAGAAGCGGCACCGTGAAGAAAACTTAACACTTGGTTCCTACATGTGGTTGTCATTTGAAAGCCGGGTGGAGGAACTTATGAAGGAACTAAAAGACTCCAGAGACAAACTGGTTCACCAGGATCAGGCTGCTAAGAATGCCATCCAGCAGATGCAGAGGGAAATTGCCTATCGGCTCGAACAGGCCAATAAGAAATGTGAGGAGGCACGTCAGGAGAAGGAGACAATGGTGATGAAGTATGTTCGAGGTGAAAAGGAAGCGCTGGACCTGCGGAGGGAGAAGGAACAGCTGGAGAAGAAGCTACGGGAGGCCACAGCAGAAGTAGACAAACAGGCTCGGAGGGGAAACTCACTGGCCCAGGATAAAGGACGTCTGCAGCAGCTCTATGATGCCAAGGAGAACGAGGTGACGCGACTTTCCCGTGAACTGGAGAAAGTCAAAGAAGAAGTCAATTCTCACGTCATCAAAGTAAAGTGGGCTCAGAACAAACTGAAGAGTGAAACCGACGCTCACAAGGAAACAAAAGACAGATTAAGAGAAACGACCGCCAAGCTGACTCAAGCAAAAGAAGAGACGGAACAGATTCGCAAAAACTGCCAAGACATGATCCGCACATACCAGGAATCTGAGGAGATTAAGTCAAATGAATTGGATGCAAAGCTGCGAGAGACCAAAGGAGAGCTGGAGAAGCAAAAACAAGAGCAGACAGACCAGCTAGAGATGCACAAGGCTAAGATTAAGGAGTTGGAGGATCTGAAGAGGACTTTTAAAGAAGGCATGGATGAACTGACCACCCTGCGGACTAAGGTTAAGTGTCTGGAGGATGAACGGCCTCGCTGGGAAGACGAACTCTGCAAATACAGAGAGATAATTAATAGACAGAAGGCCGAGATCCAGAACCAGAGGGAAAAACTCACCACCATCACTAGACTAGAGGAGCAGCACCAGAGGGATGATCAGGAAATTGCATCCTTACGGGACGAGGTGGAGAATCTGAACTCTCAGATCACTGACCTGCAGAGGGACATTGAAGGCAGCAGGACGAGAGAGGCGGAGCTATTGGGCTTCACTGAGAAATTGTCCAGTAAAAATGCTCAGCTCCAGTCTGAGAACAACAACTTACAGACCCAGCTGGACAGACTGAACAACAGCTCCAGAGAGCTGCACAGCAAACTAGAGGAGACCGAGAGATCCCTCTCTGAAATGACGGACAGGTTGAAGAGAGAGGAGCAACAGAGGCAGGAGGAAGTTTTGGCGTTGCAGACGGAGAGAACGTCGCTGCTGACGGAGACATCGCAACTAAAGACACGAGTGGAGGAATTACGAGACGAACTGGTCACTCAGAAGAGAAAACAGGCGGCCAACATCAAAGACCTCACCAAGCAGCTCTTGCAAGCCACAGGAAAGGCTAGGTTAGGGCACAAGCATGGCGTCTCTTCTTTGAGAGGAGAGATGAGGAGGGGAGGGCAAGGGAGAAGAATGTGCATCTTGGGACTCTTTTTTAGTGTCGGAGGAGGCTTACACTTTCTCAAGGTCTGCATGTTAAATGTGAACCTTAATTCTGCATATTTGATGGTCGCTACAGATGTGCCTGGTGGGTGGGAGTTTTATGCTCGTAAGAAGCTGGAGCATGTGGAGAATGGAGGATGTGATCGAGAGGGCAGCAGTATGGGCAGCCGTTCCAGTTCCTCAGGCTCTCTAAACGCACGAGGCAGCAGTATGGATGATCGCTCTCCAGAGAATCAGTCTGGTTCATCGGTGGTAGTGGTGGACAGTTTCCCCGAGGTGGACAAAGCTGTGCTGGTGGAGCGCATCGTGCGGCTGCAGAAAGCACATGCTCGTAAGAACGAAAAGATTGAATTCATGGAGGACCACATCAAACAGCTGGTGGAGGAGATCAGGAAAAAGACAAACCATTACGTGCAGCTGAGCATCCTCAACAAGTCCAAATTCGCCAAGTGGTGGAATGTTTCCCAGAGTTTTATCGACTGTTGCCGTTCAAGTGATTCTTTGACATACGGGAAGAGGCAACTTTTTAATTTCCTTTTGTTTCGTTTTGTTAAATACTACCGTTATGGAGCTGGGGTCCACTTGGACCCCATATTAGTGAAAGAAGCCTCAGACTTTAACAAAGCTAACTTGAGCCGGAGGGGAGGCATCATGGCATCGCTGTACACCTCCCACCCTGCCGACAGCGGCCTCACTCTTGACCTCTCGCTGGAAATCAACCGCAAACTCCAGGCTGTGCTAGAGGACACCCTGCTCAAAAACATCACGCTGAAGGGACAGCAGCTTTCCTCTACGAGGGAGCACATCAACTGGGAGATCAGAGAAATTAATAAAGTATGTTTTGAGGACAGGGCGCAAGGGGACTGCAGAGCTCCATTCAAAGCACAATGGCAGGATTACAGTCTTAGGGAAAATCTCCAGACACTGGGTTCGGAGATCGAACGACTAATCAAACAGCAAAGGGTGCCGGATGATACAGCCGGAAGGAAGTGAAGTCAGTCGAGGGGAAGGCTGTTACA

Function


symbol description
ccdc186 Predicted to enable small GTPase binding activity. Predicted to be involved in vesicle cytoskeletal trafficking. Predicted to be active in trans-Golgi network. Orthologous to human CCDC186 (coiled-coil domain containing 186).

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000055_03539420_03563869.mRNA True 3754 mRNA 0.48 21 3539148 3563895

Neighbor


gene id symbol gene type direction distance location
CI01000055_03532706_03537026 NA coding upstream 1954 3531374 ~ 3537194 (+)
CI01000055_03482922_03497329 AFAP1L2 coding upstream 41532 3482442 ~ 3497616 (+)
CI01000055_03471384_03476628 NA coding upstream 62293 3470754 ~ 3476855 (+)
CI01000055_03453919_03456503 NA coding upstream 82500 3453330 ~ 3456648 (+)
CI01000055_03392185_03445744 ABLIM1 coding upstream 92459 3392185 ~ 3446689 (+)
CI01000055_03604945_03612832 DCLRE1A coding downstream 41050 3604945 ~ 3613140 (+)
CI01000055_03653282_03656353 NA coding downstream 89313 3653208 ~ 3656423 (+)
CI01000055_03667192_03685378 NRAP coding downstream 102841 3666736 ~ 3685893 (+)
CI01000055_03717618_03733174 THBS2, THBS2B coding downstream 152158 3716053 ~ 3733597 (+)
CI01000055_03745295_03748598 KCNK1A coding downstream 179590 3743485 ~ 3749226 (+)
G239535 NA non-coding upstream 21018 3509117 ~ 3518130 (+)
G239526 NA non-coding upstream 191612 3347268 ~ 3347536 (+)
G239499 NA non-coding upstream 219688 3316914 ~ 3319460 (+)
G239509 NA non-coding upstream 231974 3306896 ~ 3307174 (+)
G239546 NA non-coding downstream 17006 3580901 ~ 3581110 (+)
G239565 NA non-coding downstream 60888 3624783 ~ 3625005 (+)
G239598 NA non-coding downstream 141129 3705024 ~ 3705225 (+)
G239599 NA non-coding downstream 143572 3707467 ~ 3708004 (+)
G239646 NA non-coding downstream 305837 3869732 ~ 3925859 (+)
CI01000055_02542526_02542861 NA other upstream 995030 2542216 ~ 2544118 (+)
G238534 NA other upstream 1869904 1668410 ~ 1669244 (+)
G237840 NA other upstream 3119216 418925 ~ 419932 (+)
G237680 NA other upstream 3517986 20902 ~ 21162 (+)
G239761 NA other downstream 598355 4162250 ~ 4213402 (+)
G239755 NA other downstream 690315 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 700132 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 1601597 5162990 ~ 5166647 (+)
G240099 NA other downstream 1972623 5525472 ~ 5544153 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location