CI01000055_03717618_03733174 (THBS2, THBS2B)


Basic Information

Item Value
gene id CI01000055_03717618_03733174
gene name THBS2, THBS2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3716053 ~ 3733597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03717618_03733174.mRNA
CTATATAAACCTGACCTCAATCTTAGCCTTCTCACATACCTATGCTCACATTTAGGTCTTCACCCCTACCAGCAGCCCCAGGCGCGATTCAGAACTGCATTAGCTAATGAAAACTGTCATGACGTGCTGTCACAGCAACAACCCAAACCTCTCCAGCCCAGAGCAACCCGCCTCCAGCCACCCCAAACCCTCCCCTTTTGAAAGCAAATATGCGCGTCCCTCATGATAAAATTCAAGATCAGTTATGAGGAGGGAGTCCGTAAGTCCGGCATCATCTGGATTTATCACGCATCAGCTTTGGAACAAGACATTGTTCAGTAACACCTCATGATTGACTGCGTGAACCGTGTAACCCGCTTCGTGCGCGAATTTTAAACTTTGCGCTTGGGGACCCGTGGCATCTCCAGGTTTTTACGCAATGAATTTTTGATCATCATCGTGGGTTTACCATTGTGGAACTGACTGAGAAGTAGGACGAATAGCTATTTTCGTCTTGTGCATAAAACTCAACGTTTTTGTTAGTTAGTTTTTGCTAAAATTTACGGAGTTCGCCTTTGGTTCGGGTAAGTGAGGTGCCCGTCACTATTCTATTGTTGCTGCTTTATGGGAAGTCAAAACAAATGTGGCGGGGGTTCTTAAAAGCATGTGTTCTTTTAACATAGGCTATATATATATACGTTTTAACAGTGTTTTCACTGATTCTTTTCACAACCACGAAAAGTTACATTACATTTTAATCAGAACGCGCCAAATAGACGCTCGTTTCTCAATTGCGCATGTCATTGGACGGCTGGATAGAGTTTGGTCTAATAATGTGTTTTTAATTCTAGGTGAGGTATCCTGATTTTTCAGCTGAGCAGAGCCACTGTGAGGAAGGTAATTTTATTAACGTGAACAATTAATATTTGGTTACCACTGTGATCCATAGAAGAATGATTCTCCGAAGATGTCTCCGAATATTGGCCCTTTTGCTTCTGTTCACCTCTGTAAAATCTCAAGGTAATACTGGAGGATTTGTCTATATATTCTGTATCTGAATAATCTGTATTGCTTTTTTATGTAATGAATTTTTGAATCATCCTAAGACCCAAAATATTTCTTTACATCATTACATTATTATAGTTACATTAAGTAACTTGGCTTAAGTATTAAGTTTTGTTTTATTTATTTATTTTGTTGTTTTCATTTTACTATAACAATTATATTATTATTATTATATATACAATAGTGTAATATTGGCTACAGCCCCAAATTTTTTTTGGTATCACAGAATAGCCCAGGATGTTCTCTGTAAGACTTGAAATGATGGCATGTATGGTCTGGATCAAGGTTATTGACAAATGACTTGTCTATGGTCTTTTAGTCATATTAAAGACACTAAGTTAAAATTTAAATTTATGTACAAAGGAAAATGTGTCATCTCAATTCTTACACCATCTTTAAACATCTTTTTGCCATAATTTTAAACGGTCAGTTCATGTTTAACAGTAAAAATACTCCATGTAGCTCAATATGAATATTCATGTCAACTAACAGAATAACCGAATGTAAAATAATAGCAAAACATGTACATGTACTTTTTAGATGCGCAACTGGAAGACGAGACCGTTTTTGACTTGTTTGAAACCAGTGGGATCACACGCAAGACTATCGGTGTGAAGCTTTTCAAGGGTCTGGACAGCGATGCTCCTGCATACCGCTTCATCCGTTTTGACCAGCTCCCCTCTGTCAGCTCCTCAGCACTACAACAACTTCTTTTGCAAATACAAAACAATGAAGGCTTTATTCTGACAGCCACTCTACGCCAGGACCGCACATCCCGTGGCACCATCCTTGCACTGGAAGGCCCTGGAGAGCGCAGGCAGTTTGAGGTCGTTTCGGATGGCCGAACCAACACTCTAGATTTGGTGTACTGGTGGGCCGATGGCTCACGCAACGTGATCTCTTTTGAGGATGTAGACCTCTCGGATTCACAATGGAAGAATGTAACGCTCTATGTGCATGGAGAGACGGCAACTTTGTACATTGGTTGTGGACTCATTGATAGCTTCATTCTCGATGAACCTTTCTATGAACACCTGAGCGCCACTGGTGGCCGTATGTTTGTGGCCAAAGGGTCCACCCGAGAAAGCCATTTTAGGGGCTTGCTGCAGAATGTACGTTTTATCTTTGACACCCCACTTGAGGACATTCTGGAGAGCAGGGGATGTGATCTTGGAAACCCAGTGGAGGTGAATGTAGTCAGTGAGAGCGTAGAGGAGTTGGAAGTTCCGTCTTCAATTGCTTCCAATGTGATTGGCCAGAATACAGATGTTCCAGCAACCAGCTCTTCAGAAATGATGTGTGAACGTTCCTGTGAAGAACTGGCCAACCTCTTCCAGGAGCTCAAGGGTCTCAGAGTTGTTGTTAGCAACCTCATAGATGGTCTACAAAAAGTGACAGAAGAAAACACAGCAATGAAGGAGGCACTGAATAAGATGCAGAATCTTTCGGAGCAGAGTATGTGTTGGCAAGATGGCCGTATGTTTGAGGACAAAGAGGACTGGATTGTGGATAGTTGCACTAAATGTACCTGCCAAGAAGGAAAAGTTGTTTGTCGTCAGATTACATGTCCTCCAGTGGCATGTGCCAATCCATCCTTCATCGATGGCGAATGCTGTCCAGTTTGCCTTCCAATGGACAGTGAGGACGGCTGGTCTCCATGGTCAGAGTGGACTCAGTGCACAGTCACGTGTGGGAGCGGCACTCAACAGAGGGGGCGCTCTTGTGATGACACAAGCAATACATGTTCTGGACCCTCAATACAGACTCGCAAGTGCAGTTTGGGAAAATGTGACCGAAGAGTGACATGTGGGGACGGACTGATCACACGTATCCGTCACTGTAATGCACCTGTTCCACAAAGAGGTGGCAAAGACTGTGAAGGTGATGGACGAGAGACTCAGAGCTGCCACGCAGACCCCTGTCCGATTGATGGTGGCTGGGGTCCATGGTCTCCCTGGGCATTGTGTTCAGCTACATGTGGAGGAGGTCTGAAGAGTCGTGTTAGAGAGTGTAATAGCCCCGAACCGCAGCATGGAGGAAGGAAGTGTCTCGGAGACTCCATTGAAAATGAAGTATGCAACCGACAGGAGTGTCCAATTGATGGCTGTCTTTCAAATCCCTGCTTTTCTGGGGTTGAGTGTAGCACAGCTTCTGATGGATCCTTTGAATGTGGGCCCTGCCCGAATGGTTATCGTGGCAATGGAACTTCTTGTGAAGATGTCAATGAGTGTGATATGGTTTCAGATCTATGTCATAAGGTGGGTGGCCAACAGCAATGTGTGAACACAGACCCTGGATTCCACTGTCTCCCCTGCCCCCCACGTTACAAAGGAACTCAGCCCTACGGCATGGGAGTGGAGTCAGCTAAAACCAACAAACAGGTGTGTGAACCCTACAACCCCTGTAAGGACAACAGCCACAGTTGCCACAAGTATGCTGAATGCATCTTCCTGACTCACTTCAGCGATCCGATGTACAAGTGTGAGTGCCGTATTGGTTATGCTGGAGACGGCATCATCTGTGGAGAGGACTTTGATCTGGATGGATGGCCCAACCAGGATCTTGTGTGTGGAGCAAATGCCACCTACCATTGCAAAAAGGACAATTGCCCAACTCTACCCAACTCTGGTCAGGAGGACTATGACAATGATGGGCAAGGAGATGCTTGTGATAAAGATGATGATAACGATGAAATTGTGGATGAAAGGGACAACTGCCCCCTGATGTATAACCCCAGGCAGTATGACTATGACAAGGATGATGTCGGAGACCGTTGTGACAACTGCCCATATGAACACAACCCTGCTCAAACCGACACCGACAACAATGGAGAAGGAGACGCCTGTTCTATTGATATGGATGGAGATGAGATTCTAAACGAGCGAGACAACTGCCCTCTCATTTATAACACAGACCAGAAAGACACAGATTTAGATGGTGTCGGAGACCAGTGTGATAACTGCCCCTTGGTCCACAACCCACAACAGACGGATGCAGATAATGATCTAATTGGAGACCAGTGTGATGACAACCAGGACATAGATGAAGATGGCCATCAGAATAACATGGATAACTGCCCATACATAGCCAATGCTAACCAAGCTGACCACGACGGAGATGGGAAAGGAGATGCTTGTGATTATGACGATGATAATGATGGCATTCCTGATGACCGTGATAACTGTAGACTAGTTCCCAACAAGGACCAACTGGACTCTGATGGTGATGGTCGTGGTGACGCCTGTGAGAATGACTTTGATAATGACAATGTCCCGGATATCTTTGACGCGTGCCCGGAAAACAGCGACATTAGTATCACAGACTTCCGGAAGTTTCAAATGGTTCACCTCGACCCTAAGGGAACCACGCAGATTGATCCCAACTGGGTGGTCCGAAACCAGGGCAAAGAGCTTGTGCAGACTGCCAACTCCGACCCAGGCATTGCAGTGGGCTTTGATGAGTTCAGCGCTGTGGATTTCAGCGGGACCTTCTATGTGAATACAGACAGAGATGATGACTATGCAGGTTTTGTGTTTGGATACCAGTCTAGCCGACGTTTTTACGTAGTAATGTGGAAACAGATCACGCAGACGTACTGGGAAGACAAGCCGTCAAAGGCGTTTGGCATCTCTGGCGTCTCTCTCAAGGTGGTCAACTCCACCACAGGCACTGGGGAAAATCTCCGCAATGCATTATGGCACACAGGCAACACCAAGCAACAGGTGCGCACTCTTTGGCATGACCCGAAGAATATCGGCTGGAAAGACTATACTGCCTACCGCTGGCATCTCATCCACAGACCAAAGACTGGCTTCATTAGGGTTGTTGTGTATGAAGGCAAGCAGATCATGGCAGACTCAGGTCCCATTTATGACAAGACGTTTGCAGGTGGAAGACTCGGGTTATTCGTTTTCTCCCAGGAGGCCGTCTTCTTCTCTGACCTCAAATATGAATGCAGAGTCATTCTTATGGAGAACGTTTTTGTGCTTTTTGTGTTTGTTGCAAGCGTTTAGGGGAGATGTATTATATTCAGACATTTTCTATTATCTACTGTAAATTATTTGTCTTTTTTCTGGTTATTAGTTAACGTTCCTTTTGTATTGTAACCCTTGCTGACAGATTGTAAATACTTATTTATTTGTTTACATTGACAACTTTTTACAAATGAGGTTTAAAAAGATGTTATCAAATTGCATTCATGTCAGAAATGCTCCGTCATTGGCCGTTACTGTGTCTGCATAAAGTGAATGTGACAAAAGGAACTGTAATGTAATATTCCTGAACATTTCAGAAGTATCAAGGTGTTTCACATTTCTTTGATTAAACTACAGAGGCTGCATGAAAGTAACTATCGCTTAACACAGTGACCACAATGGTGACAAACCAGGATTGTGATCTCAGAAACTTTCCAGTTTCTAGGTCATCCTAACTTGGCA

Function

symbol description
thbs2b Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to be involved in negative regulation of angiogenesis. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human THBS2 (thrombospondin 2).
thbs2 Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to be an extracellular matrix structural constituent. Involved in negative regulation of angiogenesis. Located in platelet alpha granule.

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03717618_03733174.mRNA True 5480 mRNA 0.44 19 3716053 3733597

Neighbor

gene id symbol gene type direction distance location
CI01000055_03667192_03685378 NRAP coding upstream 30160 3666736 ~ 3685893 (+)
CI01000055_03653282_03656353 NA coding upstream 59630 3653208 ~ 3656423 (+)
CI01000055_03604945_03612832 DCLRE1A coding upstream 102913 3604945 ~ 3613140 (+)
CI01000055_03539420_03563869 CCDC186 coding upstream 152158 3539148 ~ 3563895 (+)
CI01000055_03532706_03537026 NA coding upstream 178859 3531374 ~ 3537194 (+)
CI01000055_03745295_03748598 KCNK1A coding downstream 9888 3743485 ~ 3749226 (+)
CI01000055_03752947_03764493 SLC35F3A coding downstream 19350 3752947 ~ 3765045 (+)
CI01000055_03795753_03805149 ALDH18A1, P5CS coding downstream 62106 3795703 ~ 3806779 (+)
CI01000055_03903278_03905608 NA coding downstream 169493 3903090 ~ 3905734 (+)
CI01000055_03909546_03911972 NA coding downstream 175270 3908867 ~ 3912179 (+)
G239599 NA non-coding upstream 8049 3707467 ~ 3708004 (+)
G239598 NA non-coding upstream 10828 3705024 ~ 3705225 (+)
G239565 NA non-coding upstream 91048 3624783 ~ 3625005 (+)
G239546 NA non-coding upstream 134943 3580901 ~ 3581110 (+)
G239535 NA non-coding upstream 197923 3509117 ~ 3518130 (+)
G239646 NA non-coding downstream 136135 3869732 ~ 3925859 (+)
G239643 NA non-coding downstream 146769 3880366 ~ 3965963 (+)
G239748 NA non-coding downstream 392930 4126527 ~ 4127026 (+)
G239754 NA non-coding downstream 515921 4249518 ~ 4250917 (+)
G239799 NA non-coding downstream 525733 4259330 ~ 4261799 (+)
CI01000055_02542526_02542861 NA other upstream 1171935 2542216 ~ 2544118 (+)
G238534 NA other upstream 2046809 1668410 ~ 1669244 (+)
G237840 NA other upstream 3296121 418925 ~ 419932 (+)
G237680 NA other upstream 3694891 20902 ~ 21162 (+)
G239761 NA other downstream 428653 4162250 ~ 4213402 (+)
G239755 NA other downstream 520613 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 530430 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 1431895 5162990 ~ 5166647 (+)
G240099 NA other downstream 1802921 5525472 ~ 5544153 (+)

Expression


Co-expression Network