CI01000055_03795753_03805149 (ALDH18A1, P5CS)


Basic Information

Item Value
gene id CI01000055_03795753_03805149
gene name ALDH18A1, P5CS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3795703 ~ 3806779 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03795753_03805149.mRNA
TTATAAATATCTGAGATAGGCTATGTTTCAATTGTACAGATCAGGTCACCATGTATCTCCAGAGGATGTTCTCCTGTTCTCGGCTTTTAGCGAGACCGGATGCTCTGCAAACCTTCAGAAGAGCTGCTTCACAAGGCAAAATGCCACTGGCACGGGCGCACGGTAAGTCATTTGCCCACCGCAGTGATCTGCGCCAGGCCAAAAGAATCGTTGTCAAGTTGGGGAGTGCCGTCGTAACCCGTGGTGATGAGTGCGGCCTCGCTTTGGGCCGACTCGCTTCAATAGTAGAACAGGTGGCCGTGCTTCAGAATCAGGGTAGAGAGATGATGATTGTGACCAGTGGCGCTGTAGCATTTGGAAAACAAAGGCTGAGACACGAAATTCTTCTCTCACAGAGCGTCAGACAAGCCCTGCATTCAGGCCAGAATCAGCTCAAAGATATGTCACTGCCGGTTCTAGAGGCGAGAGCGTGTGCCGCTGCGGGACAAAGTGGACTTATGGCTCTGTATGAGGCAATGTTCACTCAGTACAGCACCTGTACAGCCCAGATCCTGGTAACAAACCTGGACTTTCACGACGACCAGAAAAGACGGAACTTGAACAGCACTCTGCACGAGCTGCTGCGTATGAACATCGTTCCCATTATCAACACCAACGACGCCGTGGTGCCTCCCCCAGAACCCAACAGTGACCTACAGGGGGTTATCAGCATCAAGGATAATGATAGTCTTGCAGCGCGGCTTGCCGTGGAGATGAGGGCAGATCTTCTCATCGCTCTCTCTGATGTAGAGGGCCTTTATGACAGCCCACCGGGGTCAGATGATGCCAAGCTCCTGGACACATTTTACCCTGGGGACCAGCATTCCATAACCTACGGCACAAAGTCCAGAGTTGGCATTGGAGGAATGGAAGCTAAGGTGAAAGCTGCCCTCTGGGCTCTCCAAGGTGGGACTTCTGTTGTCATTGCTAATGGTACACACCCCAAAGTCACAGGACATGTGATCACTGACATTGTTGAGGGCAAGAAAGTGGGAACCTTCTTCTCAGAGGTCAAGCCAGCTGGCCCCACAGTTGAGCAGCAGACAGAAATGGCTCGCTCTGCGGGCAGGACTCTTGCTTCCCTTGAACCAGAGCAGAGAAGTGACATCATCTGTGCATTGGCTGATCTTCTTACCGAGAGGAAAGACGAGATCTTATCTGCCAACAAAAAGGACATGGAGCATGCTGCCAGTACAGGTCGTCTGTCTCCAGCCTTGCTGAAGCGACTCAGTTTGTCATCATCTAAGCTGAACAGTCTGTCCATCGGTCTGCGCCAGATCGCAGTGTCCTCTCAGGACAGCGTTGGCAGGGTTCTGCGAAGGACCCGTGTGGCAAACAACCTGGAGCTGGAGCAGATCACGGTCCCCATAGGAGTACTGCTGGTCATCTTTGAGTCACGGCCAGACTGCCTGCCTCAGGTTTCTGCTTTAGCCATTGCAAGTGGAAATGCTCTTTTGCTGAAAGGTGGCAAAGAGGCAGCCAACACAAATCGCATCCTGCATGAGCTTGCCCAGGAGGCCCTGTCCATACATGGAGTCAAAGATGCCATTCAGCTGGTGAGCACGCGTGAAGAGGTGGAGGATCTGTGTCGTCTGGAGAAGATGATTGATCTGATCATTCCCCGTGGCTCCTCTCAGCTAGTCAGAGATATTCAGCGTTCAGCGAAGGGCATCCCTGTTCTTGGCCATAGTGAGGGGATCTGCCATGTTTATGTGGACCATGAGGCCAGTGTTGACAAAGCCATCAAGATCATCCGAGACTCCAAATGTGACTACCCTGCAGCCTGTAACGCCATGGAAACCCTGTTGGTAAAGATCCATGCTGGCCCCAAGTTTGCATCCTACCTGACCTTCAGTCCGTCAGAGGTGAAGTCTCTGCGTACCGAATACGGGGATCTGGAGTGCTGTATCGAGGTGGTGGACAGTATGCAGGAGGCTATTGATCACATCCATAAATACGGCAGTTCCCACACTGATGTTATTGTCACGGAAAACGAGGACACAGCAGAGCAGTTTCTTCAGCAATTGGATAGTGCCTGTGTCTTCTGGAATGCTAGTTCACGGTTTGCTGATGGATATCGTTTTGGTCTTGGTGCAGAGGTTGGCATCAGCACGGCCCGTATTCATGCCCGTGGGCCTGTGGGGTTGGAAGGACTTCTCACTTCCAAGTGGGTCTTACGGGGCGAAGGCCACACAGCTGCAGACTTCTCTGAGCAGGGCAGCATGACATATCTACACGAGAATCTTCCGGTGGCGCAGATTCTTCCTGGACGCAGAACCACCAGCTAGAGTCTTTAAGTAAATCTCACCCATTTAAAGACTCCCATCAGGCAGTATATTTGGAGTAAGTGTGAATGCATTGAAAATCATTTGTGGATGGAGAGCTGTTCAGTAATCCCATAAATTTAAGAGTCTTTATAGCAAATTTTTCATTGTTTGTCCCTTAATTTGGACTGTCTCAAGGGCCAAAGAGCCTTCACTTGTTTCCTGTTCTCAGAATGAACCAGTTGAACTTAAAGCTATGAAAACACATGAAAGGTTATAGACAGATAAGGGATTTTGTTTAAAGCATTGATCCATCTTCTTGTTTATGTTGTAATTTTTGTTATTATTTGTGCATTGTATTGTTTCTTTGAGTAGTGAAACATATTACTTGATCATGGCAAATATGACAATTCTGTGGAAGCTTGTTTCCACCACTGAATAAAAATAAAAAAAGTAAATGCGACTTTTTTCTATTCTGACTTTTTTCATGCAATTGCAAGTTTATATCTCACAATTCTGACTTTATAACATGCAATTGCGTGTTATAAAGTCAGAATTGCACAATGTAAACTCGCAATTCTGACTTTTTTTCTCAGAATTGTGAATTTATATATTGTAATTCTGACTTTATAACACATTTGCTAGTTACAAAGTCAAAATTGTGAGATATAAACTCGCAATTCTGAGTCAGTCTTTTTTCCCCTCAGAATTGGATTTTATAACTCGCATTTGAGAAAATAAGTCAGAATTGCGAGATACTGTATAAACATGCAATTGCGAGAAAAAAAGTCAGAATTGGGAGTTTATATTTTGCAACTCTGACTTTATATCTAGCATTTGCTAGTTTATATCCCACAATTGTGAGTTTATAACTCGCAATTCTGCCTTTATTTCGTGCATATGTGAGTTTATATCTCTCAAATTTGACATAACTCGCAATTGCGACTTTATATCTCACAATATTGAGAAAAGAAGTCAGAATTGTGAGATATAAACTCGCAGTTGTGAGGAAAAAAGTCAGAATTGTGAGATAAAAAGTCGCAATTACCTTTTTATTTTTTATTTAGTGGCGGAAACAAGCTTCCATACAATTACACCCCAGTACTGAGTTAATGAAAAGAGACCTCCCCGAACTGCCAATGTTATATTTATGTAATATTTAATATGTGAAATCCAGTAGCAATTTCAAAATGAAATTTCATGAAGAGCATTAAAAAAATTGGTGTTTATTTATAGCATATTGTGTACACATAACTTCACATTTAATAGGGAAAGAATCTTTTTCATGTGGCATAGTGCTGCTCAGATACAACATAAGAAAGCTGTATTATTATTGAAACAATATATTTCCCCACTGCTTGGTCTGTGTCAGTTGCTTTTATTGAAAAGAAAACAAAGGAAAAACATAATTTTCCTGTTCTTCTCTCATTTTCATTTTTTGTATGTTAATTGCTTTTTGATAATGAATAATGTGCAGATCTGTAGACATTTTCCTGTTACTGCTGTAAAAATCACCTGAGACAGACAGCCTTTGTCCTGAACTGCTACAGAAGGCCTTGTTATGTGTATTTAAAAGTGCTGTAACGCTCCACAAAATAGTGATGCTTATGGTGAGAAGAGTGTTCTAAAGATGTTCACAATTTTTGTATGTAGA

Function

symbol description
aldh18a1 Predicted to enable glutamate-5-semialdehyde dehydrogenase activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within phosphorylation and proline biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in several structures, including central nervous system; endocrine system; eye; immature eye; and tail bud. Human ortholog(s) of this gene implicated in cataract; cutis laxa (multiple); enterocele; and hereditary spastic paraplegia (multiple). Orthologous to human ALDH18A1 (aldehyde dehydrogenase 18 family member A1).
p5cs Predicted to enable glutamate-5-semialdehyde dehydrogenase activity. Predicted to be involved in proline biosynthetic process. Predicted to be active in mitochondrion. Is expressed in adult head; adult heart; embryonic/larval fat body; embryonic/larval midgut; and yolk nucleus. Human ortholog(s) of this gene implicated in cataract; cutis laxa (multiple); enterocele; and hereditary spastic paraplegia (multiple). Orthologous to human ALDH18A1 (aldehyde dehydrogenase 18 family member A1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12657 ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03795753_03805149.mRNA True 3957 mRNA 0.44 17 3795703 3806779

Neighbor

gene id symbol gene type direction distance location
CI01000055_03752947_03764493 SLC35F3A coding upstream 30658 3752947 ~ 3765045 (+)
CI01000055_03745295_03748598 KCNK1A coding upstream 46477 3743485 ~ 3749226 (+)
CI01000055_03717618_03733174 THBS2, THBS2B coding upstream 62106 3716053 ~ 3733597 (+)
CI01000055_03667192_03685378 NRAP coding upstream 109810 3666736 ~ 3685893 (+)
CI01000055_03653282_03656353 NA coding upstream 139280 3653208 ~ 3656423 (+)
CI01000055_03903278_03905608 NA coding downstream 96311 3903090 ~ 3905734 (+)
CI01000055_03909546_03911972 NA coding downstream 102088 3908867 ~ 3912179 (+)
CI01000055_04023182_04033823 CADPS2 coding downstream 216403 4023182 ~ 4033895 (+)
CI01000055_04035172_04094367 CADPS2 coding downstream 228318 4035097 ~ 4094656 (+)
CI01000055_04097751_04100235 FEZF1 coding downstream 290008 4096787 ~ 4100495 (+)
G239599 NA non-coding upstream 87699 3707467 ~ 3708004 (+)
G239598 NA non-coding upstream 90478 3705024 ~ 3705225 (+)
G239565 NA non-coding upstream 170698 3624783 ~ 3625005 (+)
G239546 NA non-coding upstream 214593 3580901 ~ 3581110 (+)
G239535 NA non-coding upstream 277573 3509117 ~ 3518130 (+)
G239646 NA non-coding downstream 62953 3869732 ~ 3925859 (+)
G239643 NA non-coding downstream 73587 3880366 ~ 3965963 (+)
G239748 NA non-coding downstream 319748 4126527 ~ 4127026 (+)
G239754 NA non-coding downstream 442739 4249518 ~ 4250917 (+)
G239799 NA non-coding downstream 452551 4259330 ~ 4261799 (+)
CI01000055_02542526_02542861 NA other upstream 1251585 2542216 ~ 2544118 (+)
G238534 NA other upstream 2126459 1668410 ~ 1669244 (+)
G237840 NA other upstream 3375771 418925 ~ 419932 (+)
G237680 NA other upstream 3774541 20902 ~ 21162 (+)
G239761 NA other downstream 355471 4162250 ~ 4213402 (+)
G239755 NA other downstream 447431 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 457248 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 1358713 5162990 ~ 5166647 (+)
G240099 NA other downstream 1729739 5525472 ~ 5544153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location