CI01000055_03810913_03811894 (CRYGMXL2)


Basic Information

Item Value
gene id CI01000055_03810913_03811894
gene name CRYGMXL2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3810550 ~ 3811894 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03810913_03811894.mRNA
ATCATCTTTTACGAAGGCCGCAACTTCCAGGGGCGCTCCTATGAGTGCTCCTCTGACTGCTATGACACCTACAGTCACTTCAACTGCTGCAACTCCATCCGGGTTATGGGGGGTCATTGGGTGGCCTACGAGAAGCCCAACTATATGGGGTATCAGTACATCCTGGGCCGTGGGGAGTATCCTGACTTTCACCACTGGATGGGCTTCAACAATTGTATCAGATCTTGTCAGATGTTCCCCCCATACAGAGGAGCCTACCGCATGAGAATCTACAACAGGCCTGATATGTACGGACACATGATGGAGTTCACAGACGATTGCCCCAATGTCTACGACCGTTTTGGCCACCACGGCATCTACTCCTGTAACTGTATGGAGGGCTTCTGGATCTTTTACGAGCACCCCAACTACAGAGGCCGTCAGTATTTCCTGAGGCCCGGAGAGTACAGAGCCTGCATGGACTGGGGTTGCATGAATCCCATGATTGGCTCCTTTAGGAGAATGAGGAGCAGTTTAATGTAAAAGCGGTCCTTTTTTATTCCCATTAAAGACATTAAAACTATTTAAAACAGTTCTTGCATGCTGTCTTTTCTTCAATACATTTTGAATTACTATGTAGCGAAGGAAACAAAGTTTGTTCAGCTTGCCATTTCTCTTTCAAATAAGGATCCATTGATCCGCTGCCCAATACACATCAAAATAAA
>TU273528
CTCTTTCAAATAAGGATCCATTGATCCGCTGCCCAATACACATCAAAATAAAGATTGCAATTTCAAGCCAAACTCAACTTTATAAATCTGACATGGTTGAAGAATTCATTTTAATCTCATTCCAAACCATAAAACAAGCTAATAAAAAAAAGAACTGAGGACAATTTCAATTAAATCTGGTTTAAAGCAACTCATATCCCAATTTCATATTAACATTTATCCTCAATTATGTG

Function

symbol description
crygmxl2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

NR:

description
crystallin crygmxb

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03810913_03811894.mRNA False 704 mRNA 0.47 2 3810731 3811894
TU273528 True 233 lncRNA 0.30 1 3810550 3810782

Neighbor

gene id symbol gene type direction distance location
CI01000055_03808541_03810277 CRYGMX coding downstream 241 3808293 ~ 3810490 (-)
CI01000055_03783468_03784414 NA coding downstream 26218 3782685 ~ 3784513 (-)
CI01000055_03766205_03773588 ENTPD1 coding downstream 37143 3765294 ~ 3773588 (-)
CI01000055_03658872_03663877 CASP7 coding downstream 146692 3658303 ~ 3664039 (-)
CI01000055_03643253_03646423 NA coding downstream 164308 3643174 ~ 3646423 (-)
CI01000055_03880394_03898922 TCF7L2 coding upstream 68375 3880269 ~ 3898935 (-)
CI01000055_03918168_03965674 TCF7L2 coding upstream 105208 3911302 ~ 3966460 (-)
CI01000055_04132203_04169742 CA16C, PTPRZ1 coding upstream 320191 4132085 ~ 4169742 (-)
CI01000055_04232088_04245445 AGBL2 coding upstream 420048 4231942 ~ 4245445 (-)
CI01000055_04247379_04257962 FNBP4 coding upstream 435485 4247379 ~ 4257962 (-)
G240969 NA non-coding downstream 103351 3707168 ~ 3707380 (-)
G240963 NA non-coding downstream 117892 3692591 ~ 3692839 (-)
G240959 NA non-coding downstream 124445 3686062 ~ 3686286 (-)
G240954 NA non-coding downstream 129793 3677235 ~ 3680938 (-)
G240950 NA non-coding downstream 144128 3666306 ~ 3666603 (-)
G241028 NA non-coding upstream 20601 3832495 ~ 3833001 (-)
G241037 NA non-coding upstream 38244 3850138 ~ 3850372 (-)
G241048 NA non-coding upstream 60849 3872743 ~ 3873057 (-)
G241051 NA non-coding upstream 176774 3988668 ~ 3989097 (-)
G241055 NA non-coding upstream 211292 4023186 ~ 4029661 (-)
G240975 NA other downstream 76736 3717651 ~ 3733995 (-)
CI01000055_03616564_03618430 NA other downstream 191087 3616555 ~ 3618430 (-)
G240825 NA other downstream 593137 3216174 ~ 3217594 (-)
G240723 NA other downstream 1061379 2748835 ~ 2749352 (-)
G238932 NA other downstream 1491677 2311659 ~ 2319054 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other upstream 931812 4743706 ~ 4764067 (-)
CI01000055_05338403_05341971 NA other upstream 1522391 5338403 ~ 5341971 (-)
G241542 NA other upstream 1749449 5561343 ~ 5565783 (-)
G241646 NA other upstream 2030300 5842194 ~ 5847572 (-)

Expression


Co-expression Network