CI01000055_03918168_03965674 (TCF7L2)


Basic Information

Item Value
gene id CI01000055_03918168_03965674
gene name TCF7L2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3911302 ~ 3966460 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03918168_03965674.mRNA
ATTGCTTCATATTTTCCCTGGCTCTTGAGTAAAATATTTTTGAAGTAATTTAGAGCAATTCAGAGTTTTATTCTCATTTGAGTTGAAGTTTGGAGGGAGTGGGGTTATTTCAGCCCACTAGCACCTCCTAAAACAACTGCAGAAAATAAGGAAACCAATATGATTCTAGCTGTGCGCCGTTTCACAGCTCAGATACATACAGACTATCGCACAAGTGTCTTCCGCCTATTTTTCCATTCATTCCTGTACAAAAGCAAACAGGGGCGACTCGCTTTAACTGTCCTGCTCTCTTCACCAAAAGCTCTTTTCCTCTCCCTCTCTCTGTTTCTCTCTCTCTTGCGCGCGCTCTCTCTTTCGCTCTCGTTCAAGCCCTTTTCCCCCTCCAGTACTTTTTCCTGCCCCTCTCTATTTATGAAAACGTCACTTCAAGTCCCTCCCTGTTTGAATCTCATTAGTTTTTTTCTTGTGTGTTTCTCCCTGTCAATAATCCCGAATCCAGACTCTCTCTATTTCCATCCCTCTCTATCTGTCAATCAGCGCCGCCTTTGAACTGAAAACCACTCCGACCAACTTCAACTCCCTCAATCCGAGCGCCTCAGCTCCGTCTCCGGCTTCTGTTTCTGCCAAGATTGCCCTCTTCTTTTTGAGTTTTGAACACTCACCCAGCCAAACGCCACTGCGAGTCCCTAAACTTAAAACTCGGGATTCGGGGATCACACCAAGATCAAGGGTTTAAAAACTTTTGGGTGTTTTGGCCCCCCGCAAAATTAGCGCTCCTCGGGAAAAATGCCGCAGCTGAACGGCGGTGGAGGGGACGATCTGGGTGCGAACGATGAAATGATTTCCTTCAAAGACGAAGGCGAGCAGGAGGAAAAGATTTCGGAGAACTCTTCAGCAGAAAGGGATTTAGCAGATGTCAAGTCTTCTCTTGTAAACGAGTCGGAAACGAATCAAAACAGCTCTTCGGATTCCGAGGCGGAAAGACGGCCTCCGCCTAGATCTGAAAGTTTCAGAGACAAAACAAGAGAAAGTTTAGAGGAGGCTGCGAAAAGGCAAGATGGAGGGCTGTTCAAGAGCCCACCGTACCCGGGCTATCCATTTATAATGATTCCCGACCTCACGAGCCCGTACCTCCCGAACGGATCGCTTTCACCGACCGCTCGCACAGAATTGCTTTGGTCGGCTAGTGAACTTCTGCCACAATTCACTCTGCACTGTACAGTGGCATGCCTCTCGCGCGGATACACTGTCGCCCTGAACGAGCGCTGCCCGCGAGCGCGTGAAGACACCCGCGCGAGCGGCAATATGGGAGGTGAAGACGGGAGATGTTTGGCGGCTATGAGGTCAGGAAATCGGAGCCGGCGAGGAAGCAGCTGGCCCTGTGCCGTTCTCACAGCTGCTGTGTGGCCTTACACACTCGACGCACTCGCCTCTGGGATCGGACTCCAGGAGTGCAACCGCACACTTGAGGAGAACCACTCATGTTGCTTTTTGTGGGAACCCCCCCCCAATCTCCTTTATAACTGGTTGGTCCCCTTTGCAGAACTCTTGAGGTCCTTTTCCAGTTCTCTTCAGGTCCTTTTCCAGTGTTGGGCTGAGGAGCTGCTCCCATCTGCGGCACGAAGTCTAGCCACCCAGCATGGAATACTACACCCTGGGCCCCAGCCAGAACATGCACCAATCAGACTTACATTAACACCAAGCAACACGACAGTGTGTCAGAGGGAGGTGGGGATGCGGGCTCCTGCTTTTACTCTGATTTCACCTGGGGTTTTGTTTGGACTCTTGAGCCTCAGTTTCCCTTGGACACTTTCCAGAGACTACAAGCCTGGCTTTTTTCAAGGCACCCTCAGAACCAAAGTGAAAGGCCCTGGTCTATCAAAAAAGATCAATGGAGGCCCTTTTGAAAGTAAATCCTTAATCGCTCTTTGCTCTTACGTGTCATCATTTACGTCCCCCGCTCATTTTATACAGACACAGATATTGTGTATTGTGGCGTGTGTGATTATGCGTGTGGTGCTGAGAAAAGCTCAGTCAGATCGATGTCAAGTTCAGGTGTGTCCTCCTCCCTGGCTGGCAGAGCAGGGCCGAGGGGCCGAGCAGGCAGGAGGGAGGGAGGGAATTGACAGGACTTTTGCATATATCACGGGCTGCCAGGCTAAGAGCCTGGGACTTCCCCACGCCACACTCCAAGCCTTTGATCCCTTGCTTTGGAGGAAGATTAAGGTGAACTTTCGAGAGGAAGTTGAAGTGATTTGGACTCCATCCCTCGGGTGGCCTGTAGAACGAGGAGCTTTTTTTGGACGCGTCATGGTTGTTTTAGTTGGACGAAATCTCCCCCGTGCTTCAGATGCAAACGCTGACTGCTTTATGGCCAGACGGTTTTGGCTACACGATGTGAGAGGCTTGTGCCATGCACGGCACATCAAAGACTACCACCCCCAGATCTACAAGTTGGCTGTCTCTTTGGAGCACAGGCTCTGGAGATGTGTGCCGATTCCCAGCTGGAATGGGTTTGATGGTCTAATTGTAGCCACCGGTGAACACAGTTGCATATCACAGAGAGCCTGGATCCAGTGGAATATGCTTCTTAGACTATCTTCAGATGGAGTAGAATGCACCTACAGTAGATGTTCAAGTTCCTTCTGCTCTACCTGCCCATTTATCACATGGTCAGCGCCATCTATTATTGACAGTGCAGAGCCCATTCCACACTTCACAGGGCCATTAAGGAGACGGTTTCCTTACAGAAAGGGGGGAAAAAAGACTCCCGTCTTTTTGAAACGTGTCCAAGCGCAGTGCGGAGAAGAGGAGGATGATAGCGATCAGCTAACAGCCCAATAACAGGAACACAAAGAGGAAAATGCTTCGCTCTCTCACCGCTCCCTGCGAACGACAGATTGATACAGGGCTGGTTTTTGATGCGCTGATGAATGCCGAAGGATGTGCTTGTTATTTGTTCCGTCACAGCTGTAGCTCACTTGTCATGCGCCCAAGTATCCCTAGCGCAAGGTCACGTGACCAAAACCCCAGAATGCTTTGTGACATCTGCCCCTGCCATTTTCATCAAAAGGCCGGGCCGCACTATTGGTATTTTGGGTGTTTCCTTCAGTTTATTTCATTCTCTCTTTATCAGCGAAGTTGAATTGGAGTTGAGCTGTCTTTCATAAGGGATCTTGGTCATGATATTGATCAGATTTACGTATTCAGCACTGAAGGGGTCTTGTGCCCTGCGGTATCTAGCCGGAGGGAGAGTTCAGAGTACTTATCTCGCATCGCACAAGTAAAGCCCTGCGTGCAATGACCTCTAACTTTTCCATTCGCTTCCCTTTCATTTGAACCGTCCCTTTGTATAAGGATCTCAGGCTTACCCTGGTGACATCGGCGGGGTGTGTGAGGTCATCTGACCCTTTGACCTGTCCCCAATTTCAGAGGCTCAGGGTATCAAGAAGGCCTCTCACATAAAACTGATGGGCAGTCAAAGTATCTCAATTATTATCTTAAATTTTTAAATGAAAATTCTCATTTTAGAGGTGGGAATGTGACACATCAATATCTGGGTCACAATAATATATAATAATTTTATGATTTGTTTAGTTATTCAAAACTGATGTCTTGCAGTGTTCACTCACTTGAAATATTGCAATCTATGGAAATAATTTCTTTTCTTTTCTGATAATTCTGTATGTCATTCATCTCTCATTTGTCCTTTATTCAATTGTTCTGGTTATTGTGCAATATGTAGCAATCTCTTTCTATTACCTTTATTGTACTTAAAGCGCAAGTCATAATTTATTCCTTTTATTGTGTCTGAATTGGTTTGATTTAGCAGTGCTGAACTCGACTTCTGTGCATGTGTGCGTTCCGCTCACTGGCCCCGCAGCCTGGCCAGCTTGTAGCTCTTAATAAA

Function

symbol description
tcf7l2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in digestive system development. Acts upstream of or within several processes, including diencephalon development; exocrine pancreas development; and intestinal epithelial structure maintenance. Located in nucleus. Is expressed in several structures, including anterior neural plate; brain; digestive system; gonad; and sensory system. Used to study type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in colorectal cancer; diabetes mellitus (multiple); pancreatic cancer; and prostate cancer. Orthologous to human TCF7L2 (transcription factor 7 like 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03918168_03965674.mRNA False 3910 mRNA 0.48 16 3917102 3966460

Neighbor

gene id symbol gene type direction distance location
CI01000055_03880394_03898922 TCF7L2 coding downstream 18167 3880269 ~ 3898935 (-)
CI01000055_03810913_03811894 CRYGMXL2 coding downstream 105208 3810550 ~ 3811894 (-)
CI01000055_03808541_03810277 CRYGMX coding downstream 106612 3808293 ~ 3810490 (-)
CI01000055_03783468_03784414 NA coding downstream 132589 3782685 ~ 3784513 (-)
CI01000055_03766205_03773588 ENTPD1 coding downstream 143514 3765294 ~ 3773588 (-)
CI01000055_04132203_04169742 CA16C, PTPRZ1 coding upstream 165625 4132085 ~ 4169742 (-)
CI01000055_04232088_04245445 AGBL2 coding upstream 265482 4231942 ~ 4245445 (-)
CI01000055_04247379_04257962 FNBP4 coding upstream 280919 4247379 ~ 4257962 (-)
CI01000055_04259719_04260531 LRRC10 coding upstream 292919 4259379 ~ 4261670 (-)
CI01000055_04274970_04286910 KIAA1033 coding upstream 308510 4274970 ~ 4287125 (-)
G241048 NA non-coding downstream 44045 3872743 ~ 3873057 (-)
G241037 NA non-coding downstream 66730 3850138 ~ 3850372 (-)
G241028 NA non-coding downstream 84101 3832495 ~ 3833001 (-)
G240969 NA non-coding downstream 209722 3707168 ~ 3707380 (-)
G241051 NA non-coding upstream 22208 3988668 ~ 3989097 (-)
G241055 NA non-coding upstream 56726 4023186 ~ 4029661 (-)
G241061 NA non-coding upstream 63230 4029690 ~ 4036639 (-)
G241146 NA non-coding upstream 94057 4060517 ~ 4068333 (-)
G241145 NA non-coding upstream 104966 4071426 ~ 4076408 (-)
G240975 NA other downstream 183107 3717651 ~ 3733995 (-)
CI01000055_03616564_03618430 NA other downstream 297458 3616555 ~ 3618430 (-)
G240825 NA other downstream 699508 3216174 ~ 3217594 (-)
G240723 NA other downstream 1167750 2748835 ~ 2749352 (-)
G238932 NA other downstream 1598048 2311659 ~ 2319054 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other upstream 777246 4743706 ~ 4764067 (-)
CI01000055_05338403_05341971 NA other upstream 1367825 5338403 ~ 5341971 (-)
G241542 NA other upstream 1594883 5561343 ~ 5565783 (-)
G241646 NA other upstream 1875734 5842194 ~ 5847572 (-)
CI01000055_06036788_06037622 CARTPT, CART2 other upstream 2070124 6036472 ~ 6037728 (-)

Expression


Co-expression Network