XLOC_009982 (si:ch211-197h24.9)


Basic Information

Item Value
gene id XLOC_009982
gene name si:ch211-197h24.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27603739 ~ 27609172 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019878
AAGGCACACTTTCTTTCAGCCTTTCTTTCGAGGAGGAAGTCGCTCTGCAAAGAAGAAGACATCTCTCCGTTTGCAAAAAAGAAATGAAGCGCAGAAATAACCGCAATGTCACCGAGACTTACTTTGAGGGAGAGCATTTGAGTCTCGCAGACTTGAAAAAGGAGTCTGTAGAGAATGGGAGAATGTGGTGTTCGGGGGATTTTTACAGATTCAGGGTTCAGACAGCCACCAGAGCTGGTGGATAATGATGAGAACTATTTTCTCTGGTGGGATCTATCCGTCACATCTGATGAAATATCCTCAGCTGAAGAGGATTTTCTCATGTCCTTATTCCCTCGTCGAAGTGCTGCACAGATTCGCAACCAGTCACCCTTCTTAAAGCAATTTACCAGCTCCAAGGCCTTCCAGAAGGATTCTTCCTATGGAAACTTCCGCTTCACCTTTTCACTGAAGGAGCTTCTCTGGCACTATGGAGATCAGTTCTGTGGTGGCCACAGTCCAGTTCTGCGAGTTTATGAGACTGCGCTCTACCGGCGAGAGATTGTCTATAAGATTGTGGTGCACCCTCGTGACAAAAATCATCTTTATGAGAGTTATCCTCGACTTCCTGATCAAGGTGATGGTGTGTGTGGTTACCACGATGGAGCCATGTGGTGGCGCTGTCAGGCCCCTTCTGAAACCTACAAGCTCAAGCTTGATGTGAACAGGTTTGACAAAAATGTTAGTGTGAGCTTTCATTACAAAGAAGAATACTACGTGTGGGACCATGTGTGTGTAGCTTTCCACATGGAGCCAAACTGGGTGTTGCACGTGAACCAGGACAGGCTGTTAAAGAAAGTGACTGTTTGTGAAGTGATTCCACCTTGTCTTCTGAGACCTCCGGAGACTCCACTGAGTTTAAACGAGGCCCGGCATGTATTAGCTAGTATTTAAGCTATACGGCTAGCCTAAGCTAAACGCAATGTAGTCCATGCAAATGCTTTATAAAACACAGCAGCATATAATCATGTAATTAATGTTAGTTTTGATTAAAATGCCTGAAGTTATAAGAAATTTTCACTGTTATTCACTGTTGTAAATATAAAACACGTAAACACTTACATGTCACAGTGGCATTTTTTAATAGGTTGCAATTTTTTAGATCTGCTGGAAATTTTTCCTCAAACATTTTCTTGTTCATATTTTTTACTCTTGTTTTTTTAGGATTTGAGAAATAATctttaaactaaaacatttatgCAGAAACCAAAATAATGACTTATGTAAGAAATGTGCCTTGATAGTGTCCAATTTCCACTCTAAACTGTGTGTTGATGTTCACATTTCGAAAAGGGTCATTATTATAAATAAGATAAGTCAACAGATTTGTTGACTGCACTATTTGTGACGATCACATATTGAGCAAATGGTTACTGAAAGAAATATCCATGTAGTCACTCtccaaatattctgttttgtaactgttttatcttattgtaagttgtccctgtactaggcgccttgacgttgcgccttgacattcttgagcactggataaaattgttctgcctaactgagctgaatatttgcacgtattcataacccatgtaaccctgagtatgatgtataaaagctgggaataccccagtcttctttagaagagagcaataaactgttggattcacatctctcagttgttgttgccttcctggagctccagcttactgaggaaacacacagacgATCTGCAATTTATCCCAACAGTTACCGACTGTGGAATAGGGACTGGTGTGGGAGACTGACAACCATCTCAGACTATGGGGTGTCGAAATTTAATTAACACATAGGTCAAAGCTGTGACGATAGCCAAGAAGCaacttcatttacatttaaaggcaGTAAACTGTATGAAACGACTGAATGTTCAGGGTTCATGCTGACTGCGCTGAACGGGCACTGCCATGTACTTTGATACTGCTATACTgaataaacatcttcatttgAGATCTT
>TCONS_00019879
TTTCTTTCAGCCTTTCTTTCGAGGAGGAAGTCGCTCTGCAAAGAAGAAGACATCTCTCCGTTTGCAAAAAAGAAATGAAGCGCAGAAATAACCGCAATGTCACCGAGACTTACTTTGAGGGAGAGCATTTGAGTCTCGCAGACTTGAAAAAGGAGTCTGTAGAGAATGGGTACCTGTTTAAGCACAACATTCCTGCTTATCCCAAATCTGTGAAGTTTCATGTTGATAAAGTGTCTCATGTCACAGGAGAATGTGGTGTTCGGGGGATTTTTACAGATTCAGGGTTCAGACAGCCACCAGAGCTGGTGGATAATGATGAGAACTATTTTCTCTGGTGGGATCTATCCGTCACATCTGATGAAATATCCTCAGCTGAAGAGGATTTTCTCATGTCCTTATTCCCTCGTCGAAGTGCTGCACAGATTCGCAACCAGTCACCCTTCTTAAAGCAATTTACCAGCTCCAAGGCCTTCCAGAAGGATTCTTCCTATGGAAACTTCCGCTTCACCTTTTCACTGAAGGAGCTTCTCTGGCACTATGGAGATCAGTTCTGTGGTGGCCACAGTCCAGTTCTGCGAGTTTATGAGACTGCGCTCTACCGGCGAGAGATTGTCTATAAGATTGTGGTGCACCCTCGTGACAAAAATCATCTTTATGAGAGTTATCCTCGACTTCCTGATCAAGGTGATGGTGTGTGTGGTTACCACGATGGAGCCATGTGGTGGCGCTGTCAGGCCCCTTCTGAAACCTACAAGCTCAAGCTTGATGTGAACAGGTTTGACAAAAATGTTAGTGTGAGCTTTCATTACAAAGAAGAATACTACGTGTGGGACCATGTGTGTGTAGCTTTCCACATGGAGCCAAACTGGGTGTTGCACGTGAACCAGGACAGGCTGTTAAAGAAAGTGACTGTTTGTGAAGTGATTCCACCTTGTCTTCTGAGACCTCCGGAGACTCCACTGAGTTTAAACGAGGCCCGGCATGTATTAGCTAGTATTTAAGCTATACGGCTAGCCTAAGCTAAACGCAATGTAGTCCATGCAAATGCTTTATAAAACACAGCAGCATATAATCATGTAATTAATGTTAGTTTTGATTAAAATGCCTGAAGTTATAAGAAATTTTCACTGTTATTCACTGTTGTAAATATAAAACACGTAAACACTTACATGTCACAGTGGCATTTTTTAATAGGTTGCAATTTTTTAGATCTGCTGGAAATTTTTCCTCAAACATTTTCTTGTTCATATTTTTTACTCTTGTTTTTTTAGGATTTGAGAAATAATctttaaactaaaacatttatgCAGAAACCAAAATAATGACTTATGTAAGAAATGTGCCTTGATAGTGTCCAATTTCCACTCTAAACTGTGTGTTGATGTTCACATTTCGAAAAGGGTCATTATTATAAATAAGATAAGTCAACAGATTTGTTGACTGCACTATTTGTGACGATCACATATTGAGCAAATGGTTACTGAAAGAAATATCCATGTAGTCACTCtccaaatattctgttttgtaactgttttatcttattgtaagttgtccctgtactaggcgccttgacgttgcgccttgacattcttgagcactggataaaattgttctgcctaactgagctgaatatttgcacgtattcataacccatgtaaccctgagtatgatgtataaaagctgggaataccccagtcttctttagaagagagcaataaactgttggattcacatctctcagttgttgttgccttcctggagctccagcttactgaggaaacacacagacgATCTGCAATTTATCCCAACAGTTACCGACTGTGGAATAGGGACTGGTGTGGGAGACTGACAACCATCTCAGACTATGGGGTGTCGAAATTTAATTAACACATAGGTCAAAGCTGTGACGATAGCCAAGAAGCaacttcatttacatttaaaggcaGTAAACTGTATGAAACGACTGAATGTTCAGGGTTCATGCTGACTGCGCTGAACGGGCACTGCCATGTACTTTGATACTGCTATACTgaataaacatcttcatttgAGATCTT

Function

symbol description
si:ch211-197h24.9 Is expressed in several structures, including digestive system; epiphysis; macrophage; mesoderm; and ventral mesenchyme.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-031116-15 Is expressed in several structures, including digestive system; epiphysis; macrophage; mesoderm; and ventral mesenchyme.

Ensembl:

ensembl_id ENSDARG00000093760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019878 False 1989 mRNA 0.41 3 27603739 27609172
TCONS_00019879 True 2057 mRNA 0.41 2 27603748 27609172

Neighbor

gene id symbol gene type direction distance location
XLOC_009981 si:ch211-197h24.8 coding upstream 1227 27593698 ~ 27602512 (+)
XLOC_009980 tmem67 coding upstream 22251 27564270 ~ 27581488 (+)
XLOC_009979 si:ch211-197h24.6 coding upstream 44843 27543308 ~ 27558896 (+)
XLOC_009978 invs coding upstream 101037 27442549 ~ 27502702 (+)
XLOC_009977 CR848817.1 coding upstream 187927 27415697 ~ 27415812 (+)
XLOC_009983 glipr2l coding downstream 5817 27614989 ~ 27622183 (+)
XLOC_009984 NA coding downstream 230755 27839927 ~ 27873367 (+)
XLOC_009985 znf804b coding downstream 348636 27957808 ~ 27998856 (+)
XLOC_009986 NA coding downstream 440382 28049554 ~ 28050028 (+)
XLOC_009987 NA coding downstream 660843 28270015 ~ 28371330 (+)
XLOC_009973 LO017763.1 non-coding upstream 396942 27206669 ~ 27206797 (+)
XLOC_009964 BX537166.1 non-coding upstream 959913 26640677 ~ 26643826 (+)
XLOC_009961 NA non-coding upstream 1069982 26531777 ~ 26533757 (+)
XLOC_009960 NA non-coding upstream 1092630 26509385 ~ 26511109 (+)
XLOC_009989 CR936250.1 non-coding downstream 778874 28388046 ~ 28388163 (+)
XLOC_009994 NA non-coding downstream 1051223 28660395 ~ 28667333 (+)

Expression


Co-expression Network