CI01000055_04948850_04952489


Basic Information

Item Value
gene id CI01000055_04948850_04952489
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4948624 ~ 4952634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_04948850_04952489.mRNA
CTATATAACAAATCATTTTAGCAAGAATAGGAAGCATAGGCCATTTCTCAGCTGTGAGAAGAGTTCAGTCTCACGCGCGTTCGAAAGTCACTCAGTGATGTGATGGCGTCATAATGAAATAGAACGTTGTGTTGCTACTTTAGTTTTAGCAGAGTCAGTTTTCTCAGTCTTCTCGTTGTGTATTTTGCTGTTCGTATGATAGTTACCCGAGTCAACATTTGTTATCATGGCAATGTTGAAGAGAAAACGTAGTTTTCCCGCTCAGGTGTACGACTCTTACAGCAGCTCCTCAACATTCAGCACCGATGCGGCTAAAAACCATCAGCCCGTTAGTGTTGTTGAGGAAAATGAAATGCCAATGAGAAAGCGAAGGAGGATGGACAGTTCTGTGAAGCTGCCGTCTCTTCATTTCTGTGACTGGAGCGGCAGCTCAGATCAAGATACCGCTGTGAAATATGAAAGAAGTGCTGAGGATCAGATTTCTCTACGGTACAGCGCCTGTGCTCTAGAGGATCATGATCTTCAGGAACCTCTTTCCAGCGGTCTTGAAGTCCTTCCTCCTGCGGATCAGCAGCTTCAACCTACTCCAGCTCCAGTCCACCTCATTCCACCTGTTAGTGAGGATAGTGACAGTCAGGAGAGCCAGAGGAGGAACAGTAGTTTTGGAGAGCTGATCTCTCTTCACTGGAGCTGCAGTTCAGGTCAGGGTCAGAAAGTGAAGGATCAGACCACTGCAGCCGTTAGTGAGAGACACGCTGAGGATGCAACCAGTTGGACATCTTTTATCATTGGCCGAAAGAGAAAACGAAGTTCTCACAGTGCTCAGGTGTACGACTCCCATCAGAGTACAACGTCCAGCATTGATGCGGCTGAAAACCATCAGCCCGTTAGTGTTGGTGAGGACACTGAGATGCCAATGAGAAAGAGAAGGAGGATGGATAGCTCTGAGAAGCTGCCGTCTCGTCATTTCTGTGACTGGAGCGGCAGCTCAGACCAAGATACCTCTGCGAAATATGAAAGAAGTGCTGAGGATCAGATTTCTCTACGGTACAGCGCCTGCGCTCTAGAGGATCATGGTCTTCAGGAACCTCTTTCCAGCGGTCCTCAAGTCCTTCCTCCTGCAGATCAGCAGATTCAAACTCCTCCAGATTCAGTCCACCTCAGTCCAGAACCAGATCAGAACAGAGTGGACGTGACAACTGAGGACGACATTCTGAGCCAGTATGAAATTGGCAGAATGCTTGGTAAAGGAGGATTCGGATCTGTCTATGAAGGGAGACGCTTGGAGGATGACCTTGAGGTGGCTGTGAAAATTGCCAGAAAGCCACCGAACATGAAATACATCTACACTCCTGGTCATCCCACACCCCTTCCATTAGAGGTCGGCCTGTTGATGCTTGTTAATATGGGCCCTAAAGTTCCAGAGATCATTAAACTGCTGGACTGGCAGGACCAGCCTGACCAATACATCATGATCTTGGAGCGTCCCCCATCCTGCCAAGATCTGAAGATGTTTACAGCATTCCACGGCAGCACCCTCAATGAGGACATGGCACGCTTTATCATGAGGCAGGCAACAACGGCCGCTCACATGTGCTGTCGTCGTGGAGTCTTCCATCGTGACATAAAGCGGAACAACTTGCTGATAAACACGGAAACACTTGAAGTCAAACTGATTGACTTCGGGTGCGGGGATCTCCTGCAGGAATCCGCATATGAAAGTTTCTGTGGCACTCGAAAGTACTTCCCACCTGAGTACTTCACAGAGGGCAAGTACCACGGTAAACCAGCTACTGTGTGGTCTCTGGGAGTGGTCTTATTCTTGCTGCTGTGTGGACACCATCCAAAACCCAGAGACACGCAGATGATTGATGACGGCACCTGGATTAAACCTGGCTTGTCAAATGGTCACAGAATAAGACATGGAATATCCACAAAATGGAAACTTTACCGTCATAGTTCCAGAGTTCAGCTTAGCATCTGGTGGCCTGACACAAGTGGCATCCCTCCCTCCATGCCTTGGCTGGCGGCAGTAATATTAGCATCTGGCGATATTACTTGCCTAGCAACAGTACAAAAATTCCCTGTCACAGCCGACTTTATGGCAGAGCTGCATGACATGGTCAGAATTCCTCTCGGCCGCCCCAGAAGTTCATTTGAAAGCTGCTCCTGCCACGGCATTGCACTGGATGTCACAGAATTTCCGGCTTTTGGCCACTTCATCCCTCTGCTTAGCATCTAGCAGGCTGACATGAGTGGTCCCACAATGCTTTAGCACATAGTAAATGCAATGTAGATACTGTAAATTATATTACAAATCTGTTATTTGTTCCTGATCAAGTAGTGTTGACTCAGGGCAAAGTTGTTTCATAACTTTATATTTTTTA

Function

NR:

description
LOC562179 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_04948850_04952489.mRNA True 2387 mRNA 0.48 10 4948624 4952634

Neighbor

gene id symbol gene type direction distance location
CI01000055_04920053_04936147 NA coding upstream 12030 4919069 ~ 4936594 (+)
CI01000055_04906688_04910244 C14H11ORF96, CLG19H11ORF96, C6H11ORF96, CUNH11ORF96 coding upstream 37646 4903960 ~ 4910978 (+)
CI01000055_04888583_04898249 ALKBH3 coding upstream 50256 4888583 ~ 4898368 (+)
CI01000055_04869576_04887020 HSD17B12, HSD17B12A coding upstream 60665 4869483 ~ 4887959 (+)
CI01000055_04834611_04844496 API5 coding upstream 103322 4834611 ~ 4845302 (+)
CI01000055_05047161_05054848 VAC14 coding downstream 93597 5046159 ~ 5055449 (+)
CI01000055_05086576_05086973 NA coding downstream 133392 5086026 ~ 5087381 (+)
CI01000055_05121603_05155153 GALNT18B, GALNT18A, GALNT18 coding downstream 168969 5121603 ~ 5155153 (+)
CI01000055_05163240_05166231 PIGY, PYURF coding downstream 210356 5162990 ~ 5166647 (+)
CI01000055_05176060_05176484 NA coding downstream 223193 5175772 ~ 5176633 (+)
G240014 NA non-coding upstream 84787 4853797 ~ 4863837 (+)
G240020 NA non-coding upstream 147079 4801341 ~ 4801545 (+)
G240000 NA non-coding upstream 154619 4793787 ~ 4794005 (+)
G239998 NA non-coding upstream 157721 4790685 ~ 4790903 (+)
G239944 NA non-coding upstream 268549 4679812 ~ 4680075 (+)
G240052 NA non-coding downstream 20534 4973168 ~ 4973408 (+)
G240055 NA non-coding downstream 40231 4992865 ~ 4993344 (+)
G240061 NA non-coding downstream 48974 5001608 ~ 5002128 (+)
G240062 NA non-coding downstream 49636 5002270 ~ 5003077 (+)
G240063 NA non-coding downstream 50809 5003443 ~ 5003746 (+)
CI01000055_04265119_04272728 NA other upstream 675909 4265119 ~ 4273913 (+)
G239755 NA other upstream 693532 4254210 ~ 4255092 (+)
G239761 NA other upstream 735222 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 2404506 2542216 ~ 2544118 (+)
G238534 NA other upstream 3279380 1668410 ~ 1669244 (+)
G240099 NA other downstream 583884 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 661744 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 1134191 6087034 ~ 6088759 (+)
G240344 NA other downstream 1211226 6163860 ~ 6164011 (+)

Expression


Co-expression Network