CI01000055_05163240_05166231 (PIGY, PYURF)


Basic Information

Item Value
gene id CI01000055_05163240_05166231
gene name PIGY, PYURF
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5162990 ~ 5166647 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_05163240_05166231.mRNA
CTATAAAAATCAAACCAAGTAAATATAATCTATTTGTCATATATGGAAAACCTTGAATATCACATAATGAGCTTTCATTGATGTTCTCAGCTTATTTGATTTGCTTATTTAAGTAACATACATTCTCGACTTCAAATTCCGTTCATTTTCAATTATTTAGATGTTTTTGTTTTCCCAGTGATTAGCTTTAAGGTCCCAGACACAGAAGTAAACATCTTCCAAAGAACAAGAGGGTACAGTGAGATTTCACATGGCAGAGGCAATCGATTCATTCAATTCAACGAAGAATGCACCTACCCACAGTGCAGTCTGTCCTGACTTTGGCCTTCATTTGACATGCTTGACAGCTCAAAACAGCAGAAATACGGCTTTGATAGTTAGGGATATTGAGGGGAATGTGTCCCAGTTGGTGTTTTCTGGTGGTCATAAAAATCCATGCAACATGGCATGGTCAACAGGGCCTCCTCCATATCATCGAATAAACCTCATCTACCTTGAGCGAGAGAGATCTGTGACCGTCCAGCCGCTCTTGCGTCCTGTGAGCGCCGTTAAGATCCGAGGACAACAGAGGAGCCGGAGTGATGGAGTGAAGGGCAGTGAGAGTCAGGCGTTTGATGTGTCCCTCCTTGAGTTTCTTGTGTGTCCACTGTCCAAAAAACCCTTGAGGTATGACGAAAGGAGCAATGAATTAATAAACGAAGAGCTTGGCATTGCATATCCCATCATTGATGGTATTCCTAACATGATCCCACAGGAGGCACGAATGATCCATAAGACCGAAGCGACTGAAAAACCCACTGAATCTTGAGTTTATAAAGCAAATATTCATTTTCTGCCACAATGTTTTTCTCCCTGTCTACAGTAACTGTTCTTGTGCCATTGATATCTTTGTCTGGACTGTTTTACTCGGCGACCGTGGACGAAAATTTTCCCCAAGGCTGCACGAGTGCAAGCAGCGTGTGTTTCTACAGCCTGCTGTTGCCAGTAACTATTCCTGTTTATGTTTTCTTCCACCTTTGGAAGTGGATGGGAATCAAATTATTTAGACACAATTAGACTGTAGCTTCCTTTTTTATTCCCACACAACATGAGACGATTTAAATTTTTTGAACAATGTTTGTTTGTTAACAGTGCACATTGAAGATTCATATACAAGAACATTTAACTGTATGTAAACAATGAAGCGAACAACGTAAAAATACACA
>TU272472
CCAGTTTACCGCTTCCGGTTCACCGTTGGCCTCTGTCAAACGAGTGAAACAAGTTTTGTTTCTAGCCATACATTACTCTTGGGATATGTCTAATGCTTTGAGGACACTTACCACTGGAGTTTTTAGCGTGCAGAGATCTGTGACCGTCCAGCCGCTCTTGCGTCCTGTGAGCGCCGTTAAGATCCGAGGACAACAGAGGAGCCGGAGTGATGGAGTGAAGGGCAGTGAGAGTCAGGCGTTTGATGTGTCCCTCCTTGAGTTTCTTGTGTGTCCACTGTCCAAAAAACCCTTGAGGTATGACGAAAGGAGCAATGAATTAATAAACGAAGAGCTTGGCATTGCATATCCCATCATTGATGGTATTCCTAACATGATCCCACAGGAGGCACGAATGATCCATAAGACCGAAGCGACTGAAAAACCCACTGAATCTTGAGTTTATAAAGCAAATATTCATTTTCTGCCACAATGTTTTTCTCCCTGTCTACAGTAACTGTTCTTGTGCCATTGATATCTTTGTCTGGACTGTTTTACTCGGCGACCGTGGACGAAAATTTTCCCCAAGGCTGCACGAGTGCAAGCAGCGTGTGTTTCTACAGCCTGCTGTTGCCAGTAACTATTCCTGTTTATGTTTTCTTCCACCTTTGGAAGTGGATGGGAATCAAATTATTTAGACACAATTAGACTGTAGCTTCCTTTTTTATTCCCACACAACATGAGACGATTTAAATTTTTTGAACAATGTTTGTTTGTTAACAGTGCACATTGAAGATTCATATACAAGAACATTTAACTGTATGTAAACAATGAAGCGAACAACGTAAAAATACACAATAAAACTGCAAATACCAA

Function

symbol description
pigy Contributes to phosphatidylinositol N-acetylglucosaminyltransferase activity. Acts upstream of or within GPI anchor biosynthetic process. Located in endoplasmic reticulum membrane and plasma membrane. Part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex.
pyurf Involved in GPI anchor biosynthetic process and positive regulation of metabolic process. Located in endoplasmic reticulum membrane. Part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex.

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component

KEGG:

id description
K11001 PIGY; phosphatidylinositol N-acetylglucosaminyltransferase subunit Y

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_05163240_05166231.mRNA False 1205 mRNA 0.40 4 5162990 5166628
TU272472 True 852 TUCP 0.42 2 5165492 5166647

Neighbor

gene id symbol gene type direction distance location
CI01000055_05121603_05155153 GALNT18B, GALNT18A, GALNT18 coding upstream 7837 5121603 ~ 5155153 (+)
CI01000055_05086576_05086973 NA coding upstream 75609 5086026 ~ 5087381 (+)
CI01000055_05047161_05054848 VAC14 coding upstream 107541 5046159 ~ 5055449 (+)
CI01000055_04948850_04952489 NA coding upstream 210356 4948624 ~ 4952634 (+)
CI01000055_04920053_04936147 NA coding upstream 226396 4919069 ~ 4936594 (+)
CI01000055_05176060_05176484 NA coding downstream 9199 5175772 ~ 5176633 (+)
CI01000055_05183333_05195895 BTBD10B, BTBD10, BTBD10A coding downstream 16705 5183333 ~ 5196570 (+)
CI01000055_05212820_05215358 BORCS5 coding downstream 44843 5211471 ~ 5216143 (+)
CI01000055_05216403_05221104 NA coding downstream 49572 5216200 ~ 5221170 (+)
CI01000055_05263543_05300250 TMTC3 coding downstream 96619 5263247 ~ 5300649 (+)
G240071 NA non-coding upstream 3975 5158732 ~ 5159015 (+)
G240068 NA non-coding upstream 4713 5157917 ~ 5158277 (+)
G240116 NA non-coding upstream 80244 5082532 ~ 5082746 (+)
G240077 NA non-coding upstream 126407 5036120 ~ 5036583 (+)
G240143 NA non-coding downstream 2351 5168979 ~ 5169329 (+)
G240154 NA non-coding downstream 66186 5232814 ~ 5233313 (+)
G240163 NA non-coding downstream 80006 5246634 ~ 5251328 (+)
G240171 NA non-coding downstream 150658 5317286 ~ 5317495 (+)
CI01000055_04265119_04272728 NA other upstream 890275 4265119 ~ 4273913 (+)
G239755 NA other upstream 907898 4254210 ~ 4255092 (+)
G239761 NA other upstream 949588 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 2618872 2542216 ~ 2544118 (+)
G238534 NA other upstream 3493746 1668410 ~ 1669244 (+)
G240099 NA other downstream 369890 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 447750 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 920197 6087034 ~ 6088759 (+)
G240344 NA other downstream 997232 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 1167696 6310117 ~ 6334801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G183175 NA non-coding NC_053129.1 CM020926.1 9126721 ~ 9129230 (-)
tiger barb (Puntius tetrazona) G167644 pyurf,LOC107753523,LOC107665713,LOC107679626 unknown NC_056723.1 CM032092.1 8546551 ~ 8548868 (+)