XLOC_009984


Basic Information

Item Value
gene id XLOC_009984
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27839927 ~ 27873367 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021720
GCATAAAATGACAattattataaatagtttttCAATGTTTATGTCATAAGTGATTCTTTTAAAGTGGTTTTCAAGAATATTTTATAGTATATACTGTAAACTATTACACTTACTCTGTCTTCTGTTAATCATAGCAAAAATGTATTATGGCTACTCTTCTCTGCTTAGACAATACTAAAAGCAAACAGAACATTCTAGTATATTGTGTAGCCTTATATCCCTAGTGGGGGTTAGAGGACAGTCTGATAGACTGATGAAAGGAGAAATGAAATGAAGGTAGTGTATTCTTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021720 True 291 lncRNA 0.30 2 27839927 27873367

Neighbor

gene id symbol gene type direction distance location
XLOC_009983 glipr2l coding upstream 217744 27614989 ~ 27622183 (+)
XLOC_009982 si:ch211-197h24.9 coding upstream 230755 27603739 ~ 27609172 (+)
XLOC_009981 si:ch211-197h24.8 coding upstream 237415 27593698 ~ 27602512 (+)
XLOC_009980 tmem67 coding upstream 258439 27564270 ~ 27581488 (+)
XLOC_009979 si:ch211-197h24.6 coding upstream 281031 27543308 ~ 27558896 (+)
XLOC_009985 znf804b coding downstream 84441 27957808 ~ 27998856 (+)
XLOC_009986 NA coding downstream 176187 28049554 ~ 28050028 (+)
XLOC_009987 NA coding downstream 396648 28270015 ~ 28371330 (+)
XLOC_009988 itga8 coding downstream 510391 28383758 ~ 28512860 (+)
XLOC_009989 CR936250.1 coding downstream 514679 28388046 ~ 28388163 (+)
XLOC_009977 CR848817.1 non-coding upstream 424115 27415697 ~ 27415812 (+)
XLOC_009973 LO017763.1 non-coding upstream 633130 27206669 ~ 27206797 (+)
XLOC_009964 BX537166.1 non-coding upstream 1196101 26640677 ~ 26643826 (+)
XLOC_009961 NA non-coding upstream 1306170 26531777 ~ 26533757 (+)
XLOC_009960 NA non-coding upstream 1328818 26509385 ~ 26511109 (+)
XLOC_009994 NA non-coding downstream 787028 28660395 ~ 28667333 (+)
XLOC_010005 NA non-coding downstream 1337995 29211362 ~ 29230847 (+)

Expression


Co-expression Network