CI01000055_06036788_06037622 (CARTPT, CART2)


Basic Information

Item Value
gene id CI01000055_06036788_06037622
gene name CARTPT, CART2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6036472 ~ 6037728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06036788_06037622.mRNA
TCCCTCCATTCAGGACCATGGAGAGCTCCAGTCTGAGGACGCGCATGGCTGTGTGCGCGCTGCTGCTCTGCTTGTTGACCGGAGCCAGAGCGAACGACTCTGAGCCGGAGACAGAGGTGGAACTGGACACGAGAGCCATCAGAGACTTTTACCCAAAAGACCCAAACCTGACAAGTGAAAAACAGCTTCTCGGGGCTCTGCAAGAAGTTCTGGAAAAGCTGCAGACGAAACGAATTCCACCTTGGGAGAAGAAATTTGGTCAAGTCCCCATGTGTGATTTGGGGGAGCAGTGCGCGATCAGAAAAGGCTCTCGAATCGGAAAGATGTGCGATTGTCCGCGCGGAGCTCTCTGCAACTTTTTCTTGTTAAAGTGTTTGTGATGGAAACACGCATTTCGGAATGGATTGTAATGAGATTGAGGTGATCCATATGCATTATATATCATAAATAACTACAATTTTATTTATATTAATATTTTTTTAAGTGAAGAGACTGAAGACACTGACGAAAAGTTGTAAAGAAATTGTTCTTCAAATATTTGTGATGTAAACATGTGATATTGTCATATTTAATGTTAATCTGCTGTTTTGTGCATTAAAGTGCAAACTTGTTTTGTAAAATTGTCTGTGTATCGGTTACTTCTATATTTGCATTATATGAAAAATGTGATTTTGATTTTGATAAAAAGACAATAAA
>TU274312
AAAAGGGTGCAAGGCTGTCGAGATGGTTTATTTGCGCCAAAACTTTTAACTGAGACGTATAAAGGCGTTGCGCGCTCAAGTGCCAAAGCTCCCTCCATTCAGGACCATGGAGAGCTCCAGTCTGAGGACGCGCATGGCTGTGTGCGCGCTGCTGCTCTGCTTGTTGACCGGAGCCAGAGCGAACGACTCTGAGCCGGAGACAGAGGTGGAACTGGACACGAGAGCCATCAGAGACTTTTACCCAAAAGACCCAAACCTGACAAGTGAAAAACAGCTTCTCGGGGCTCTGCAAGAAGTTCTGGAAAAGCTGCAGACGAAACGAATTCCACCTTGGGAGAAGAAATTTGGTCAAGTCCCCATGTGTGATTTGGGGGAGCAGTGCGCGATCAGAAAAGGCTCTCGAATCGGAAAGATGTGCGATTGTCCGCGCGGAGCTCTCTGCAACTTTTTCTTGTTAAAGTGTTTGTGATGGAAACACGCATTTCGGAATGGATTGTAATGAGATTGAGGTGATCCATATGCATTATATATCATAAATAACTACAATTTTATTTATATTAATATTTTTTTAAGTGAAGAGACTGAAGACACTGACGAAAAGTTGTAAAGAAATTGTTCTTCAAATATTTGTGATGTAAACATGTGATATTGTCATATTTAATGTTAATCTGCT

Function

symbol description
cart2 Predicted to enable neuropeptide hormone activity. Predicted to act upstream of or within several processes, including adult feeding behavior; cellular response to starvation; and negative regulation of appetite. Predicted to be located in extracellular space. Is expressed in basal plate midbrain region; brain; and neurons. Human ortholog(s) of this gene implicated in obesity. Orthologous to human CARTPT (CART prepropeptide).
cartpt Predicted to enable neuropeptide hormone activity. Involved in several processes, including negative regulation of bone resorption; positive regulation of epinephrine secretion; and positive regulation of transmission of nerve impulse. Located in extracellular space and secretory granule. Implicated in obesity.

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06036788_06037622.mRNA False 696 mRNA 0.41 3 6036472 6037639
TU274312 True 673 TUCP 0.44 3 6036584 6037728

Neighbor

gene id symbol gene type direction distance location
CI01000055_05993097_06007190 MAP1AB coding downstream 29282 5992460 ~ 6007190 (-)
CI01000055_05925014_05930723 NA coding downstream 104561 5924962 ~ 5931911 (-)
CI01000055_05863574_05870891 ABHD2, ABHD2B coding downstream 165338 5862756 ~ 5871134 (-)
CI01000055_05810206_05834127 CACNA2D4 coding downstream 202345 5810206 ~ 5834127 (-)
CI01000055_05800423_05807271 EFCAB6 coding downstream 229201 5800423 ~ 5807271 (-)
CI01000055_06050715_06052886 NA coding upstream 12652 6050291 ~ 6052886 (-)
CI01000055_06089001_06094491 NA coding upstream 51143 6088782 ~ 6094491 (-)
CI01000055_06097127_06098590 NA coding upstream 59488 6097127 ~ 6098590 (-)
CI01000055_06100647_06103912 ACTR6, ARP6 coding upstream 62769 6100408 ~ 6103912 (-)
CI01000055_06105621_06111696 GTSE1 coding upstream 67982 6105621 ~ 6111696 (-)
G241652 NA non-coding downstream 75705 5960137 ~ 5960767 (-)
G241688 NA non-coding downstream 90961 5941292 ~ 5945511 (-)
G241678 NA non-coding downstream 128820 5907430 ~ 5907652 (-)
G241656 NA non-coding downstream 183001 5853049 ~ 5853471 (-)
G241655 NA non-coding downstream 228124 5808074 ~ 5808348 (-)
G241717 NA non-coding upstream 28509 6066148 ~ 6066450 (-)
G241699 NA non-coding upstream 36288 6073927 ~ 6075915 (-)
G241719 NA non-coding upstream 48688 6086327 ~ 6086577 (-)
G241711 NA non-coding upstream 52750 6090389 ~ 6092031 (-)
G241741 NA non-coding upstream 123513 6161152 ~ 6163026 (-)
G241646 NA other downstream 188900 5842194 ~ 5847572 (-)
G241542 NA other downstream 470689 5561343 ~ 5565783 (-)
CI01000055_05338403_05341971 NA other downstream 684295 5338403 ~ 5341971 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other downstream 1256204 4743706 ~ 4764067 (-)
CI01000055_03918168_03965674 TCF7L2 other downstream 2070452 3911302 ~ 3966460 (-)

Expression


Co-expression Network