CI01000055_06143884_06145039


Basic Information

Item Value
gene id CI01000055_06143884_06145039
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6142785 ~ 6145423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06143884_06145039.mRNA
GTATAAATATATCTGATGAGGAGATGTGACACTGTGCACATAAACCATCTCACAACATGACTTACATTACACAATGTATATATATATATATATATACATTGTTTCTTCATTTGGGCCTATACTTTTCATATTCTTTCAACTTTTAAAATGTCATTTTTTTGTGGGCAGATGTACTTTTTCATTTCCTAAACAACGTTCATCAGCTTATATTGGGACTTCTCATTTCTCACCTTCACCACTGAGTGGAAAATGTAGCTTGGTTATGTTTTCTGTGGGACAAAAGTTGTCTTCCTCCAGGTGGCGCATGGCTGAGAACCGCAACCTCCACGACTGTATTCAAATCTCAGGACGTTATTACTGGATACATTTGTTCACTAAAAAGTATATTTGGTTAAATATATTAATTTGTTAACACTTAGCATGCAAAACTGACCCACAATCTCGTTTTTAAATGATTTTTTAAAAATCCTCATCTATTATTAACAAACGATTTGATTGATCAATTCTGATCATCGCTGAGAAAAGTAACAGCTGACACATGATTGTATTGTCTCGTGGTGCCTGTTATTTTTCTCAGCGCTGTTCGGGGATAGACCAAGCACAGTTGTTTGTAAATACTGTATGATCCCTTATGACAACAATTTAAACCTAAATAACGACACTAAAAGACTTTAATATTCTTTTAATCGAAAATACACAGAGAATAGCTAAAAATTATTATTTAAACATATTAGAGACAACCTCCGGTCCAATAAACCACGCCCCGTTTAATGTTAATTTCCTTTCTTTGGTCTTTTCTAGCCTAGTCAGTAACGTTAGCCATGGAAAGAGCTCGTTAGTGCGTTTGAGTTTAATGTTTTAATCACACGTAGTAATTCTGTTTAGGTCAAACTAGATTTTGCATTTCGAGAAGTAATTTTTTTATAAGCTCTCCAAGGACGCATATTCACTCCTTCACAATAAGGGCACTTAATAGGCAGCCTATCCAGGATGTGCTCGTACGGCGCCATTTTCCCTGGGAGGGAATGTTAACAGAAGCACACTGCCAACGTGCACTATTAAGGGCCCTAGAAATCTGTTTTACTAAGTGATATAAAATATGGATTCAGCGTCGACCACCTCTAAACTCATCTATAAAATGTCTACTGAGGATATCACAAAACTGATACAGCTGCGGTCGAGCAACTCAGCGCTTTTTGACGGGAGGAAAAATTCGTCAAAAACAGCCTGGAGTGCAATACTCAGAGAAATGGGGCTTGAGGAAAAGATGACAACTGAGCAGATTGCCAAAAAGTGGGAAAACCTGAAGGCAAGATATAAGGTTGGTCTCACTGCCAATTGTGTTTTTCAAATGCCAAAAATATTCAACAGTTTAGTAAATTTACCAATTCATTACAAGGATGCAAAATATCCTCCCACCGGCGTGGAGAAGAACCCCACCTGCTGGAAATGGTTCAATCTCATGGACGATGCTCTGGCTGAAGAGTTTGATGAAAAGGTCAGCCAGCAAGTGATCACCTCAGAAGCTGACAATGATAATGCACCTCATCCGAGTAAGAGGTTACGCCAGATCAAAGTTGGAGGAGAAATATTAGAATTTCTGGAAGAGGAAGGAACTTCGGTGAATGCGCCACCAGCCTCCAAATCGCATTTGGTTAAGCGGGGAATACAAAAAGGCAAACAGACAGCAGAGGGCCATTCATTGGATATCATGAGAACCAAACTTCAAAGAGAAAGACAGCTTCTAGAAAAAGAACTTGGAGGCCTGGACAGAGAAAAAGCCCTTTTAGAGCGGGAAAGGGCCCTTGCGGATCGGGAAAGAGCAGCTCTTCAGCGGGACAGAGCCCAGGTAGAGAAGGACAAAGCTGCGGTTAACAGAGACAAAGCGTCATTGGAACAGGACAGAGCCAGACTGCAGAAAGACAGAGACGCTTTGGCCAGGGACAGAGTGGCCTTTGAAAAAGACAAAAGGTCGGCAGATTTCACAAATCATGTGAAAAGCAGTTCAGGATGCAATGGACTGGACTGTCCTCATGAAAAGAACAGAGAAAAATTAATATTCTTACTTGAAAGGGTGATGGAAAAAATTTGAAGCAACTCTGAGAATGAGGCAAACCTCAGGGAAAAACGGATACTGCAACGAGTTCTGTGAGCTTATGGGATATCTGAACGCTCCTTGAGTTGATGTCTTTGCGGTCTGAAGAGACATTTAAACATTTCATTTTTGTCTATAAAACTTTTTTTTGTACTTTTCACTTCTAAATCAATCACATTTGTCACAGTCTTGACTCATAGAATGGATTTCACTTACCACATACATTGGAAGGGTGCACAAGGGCCCCTGAACTAAGATGTTTTTGAGATTTGTTTATTTACTTGTGAATGTTGACTAAGAAACACAGAATGTGATGCTTTATTTCTTATGTAATGTAATATAACAGTGTCTGTTAGTAAAGTATACCGTTTGTGCCATACA

Function

NR:

description
Zgc:113426

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06143884_06145039.mRNA True 2476 mRNA 0.39 3 6142785 6145423

Neighbor

gene id symbol gene type direction distance location
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B coding upstream 54037 6087034 ~ 6088759 (+)
CI01000055_06076584_06085051 NEDD1 coding upstream 57116 6076584 ~ 6085669 (+)
CI01000055_06072755_06075308 SH3GL3B, SH3GL3 coding upstream 67272 6072755 ~ 6075513 (+)
CI01000055_06054137_06069292 GLSL coding upstream 73319 6054137 ~ 6069466 (+)
CI01000055_05946358_05975922 PPIP5K1, PPIP5K1A, PPIP5K1B coding upstream 166863 5946358 ~ 5975922 (+)
CI01000055_06148933_06151962 NA coding downstream 3261 6148684 ~ 6152205 (+)
CI01000055_06154806_06161718 NA coding downstream 9383 6154806 ~ 6162076 (+)
CI01000055_06164325_06174472 MXG, MXD, MX2, MX, MX1 coding downstream 18902 6164325 ~ 6174763 (+)
CI01000055_06177831_06186773 MXG coding downstream 32408 6177831 ~ 6186773 (+)
CI01000055_06191356_06221464 NA coding downstream 45752 6191175 ~ 6221822 (+)
G240444 NA non-coding upstream 6645 6135903 ~ 6136140 (+)
G240433 NA non-coding upstream 19103 6120554 ~ 6123682 (+)
G240432 NA non-coding upstream 23001 6119544 ~ 6119784 (+)
G240431 NA non-coding upstream 23631 6118918 ~ 6119154 (+)
G240429 NA non-coding upstream 25617 6111988 ~ 6117168 (+)
G240450 NA non-coding downstream 17938 6163361 ~ 6163671 (+)
G240453 NA non-coding downstream 54715 6200138 ~ 6200482 (+)
G240358 NA non-coding downstream 185908 6331331 ~ 6333548 (+)
G240472 NA non-coding downstream 254570 6399993 ~ 6400807 (+)
CI01000055_05614889_05616453 NA other upstream 525194 5614065 ~ 5617591 (+)
G240099 NA other upstream 598973 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 976138 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1870070 4265119 ~ 4273913 (+)
G240344 NA other downstream 18437 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 188901 6310117 ~ 6334801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024046 zgc:171459 coding NC_007136.7 CM002909.2 19666621 ~ 19668179 (+)