CI01000055_06357064_06359067 (KCNA1A, KCNA1L, KCNA1.S, KCNA1)


Basic Information

Item Value
gene id CI01000055_06357064_06359067
gene name KCNA1A, KCNA1L, KCNA1.S, KCNA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6356424 ~ 6359067 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06357064_06359067.mRNA
CTACAAAAGGGAATCGAGGGTGCATTACTGACAGGAGACTGCCGGCAGAAGACGCATTCCTTCAGTAGCGAGGTGAGCACTATAACTGCCTGTATCAGCCTGAAGTGAAAGTCATTTTCATGTTTTCCTATCAATTTATTTACTCAAACTTACATCTAAGCTATTCAATAGTATGTTTCCCTATATAGTGAGAAGTAGACTGCATGTATGTGGTGATGGAGCAAAAGTGACAGTGTCCTGTCACATCTTTTCAATAACCTAAATGAGCATAATAATTCAGAATTGTGCCCTTAAGGCTGTGCACTTCTGTGATTTATACATACAATAACAAGTAAATAAATAAATAAGTAGTGTGAACTTGCTGAGCAAGCAAATATCGCCGCTGTTCGATCCATTTTTCTCTGACTCGGTGACAGAGGCAGCCGTAGTGGATGCAGCGGAAAGGAGCGATGGTCGAATCAGTGACAACCGCAGTGGGGCCACACTGAGGAAGCATCAAGTTATACCCTATACCCGGGGACCGAGATAGATTTAAGGGTCTGGAATCGGAGAAAAGGAAGGAAAGCGACGCCTTGGGAGGGCAATTGGATGTCTACTCAATTAAATTAACTCCTGCGGAGCTCCAACTTTGACCTGCAGGATGACAGTCGTGGCTGGGGACAACATGGACGAGACCTCTGCCGTGCCAGGACATCCGCAGGACACATACCCGCCTGACCACGACGATCATGAATGCTGCGAACGAGTGGTCATCAATATAGCGGGGCTGCGCTTCGAGACCCAGCTCAAAACTCTCGCCCAGTTCCCAGAGACTCTCTTAGGTAACCCAAAGAAACGGATGCGGTATTTTGATCCCTTGAGAAACGAGTACTTCTTTGACAGAAATCGTCCGAGCTTTGACGCCATCCTCTACTACTATCAGTCCGGTGGAAGACTGAGAAGGCCGGCAAACGTCCCATTGGATATGTTCTCGGAAGAAATTAAGTTCTATGAACTTGGGGTCGAGGCGATGGAGAAGTTTCGCGAAGATGAGGGCTTCATCCGTGAGGAAGAGCGGCCCTTACCAGAGAAGGAGTTTCAACGGCAAATCTGGCTTCTGTTCGAGCATCCCGAGAGCTCGGGGCCGGCCAGAGGCATTGCTATCGTATCCGTCATGGTCATTTTAATTTCCATTGTCATTTTCTGTTTGGAGACTTTACCTGAACTGAAAGAGGACCCTAGGGGGCGTTCACAGACTATAGGCAACACCACCTTCTACTACAAACCAAACATCCTGGCTGATCCCTTTTTCATTATAGAGACCCTCTGTATCATCTGGTTTTCATTTGAATTGATAGTGCGCTTCTTTGCTTGCCCAAGCAAAGCGGCTTTCTTTAAGAATATGATGAACACCATTGACATCGTGGCCATCATCCCCTACTTCATCACGCTGGGCACAGAGTTAGCAGATGAGCCGGACGGAAAGGAGGGAAAGGGCGAGCAGGCAACATCACTGGCCATCCTCAGGGTGATCCGTCTGGTCAGGGTGTTTAGGATCTTTAAGCTATCAAGGCACTCCAAAGGCCTTCAGATTTTGGGGCAGACCCTCAAAGCTAGTATGCGAGAGCTTGGATTGCTTATTTTCTTCCTCTTCATTGGCGTCATATTGTTCTCCAGTGCTGTGTATTTCGCAGAGGCCGAGGAAAAAGAGTCGTACTTCAGCAGCATCCCGGACGCGTTCTGGTGGGCGGTTGTGTCGATGACTACCGTAGGCTACGGGGACATGGTGCCAGTGACTATAGGGGGCAAGATCGTGGGTTCCCTGTGCGCCATCGCCGGTGTGCTGACCATCGCCCTACCCGTGCCTGTTATCGTGTCCAACTTCAACTACTTCTACCATAGAGAAACCGAAGGAGAGGAGCAGGCCCAACTCCTCAACGTGAGCAACCCGAACATCGCCTCCGATTCCGACTCTAGTCGTCGCAGCTCCTCGACCGTCAGCAAGTCCGAGTACATGGAGATAGACGGAGACATAAACAACAGCATCGACAACTTCAGAGAGGCCAACCTCAGAACTGGCAACTGCACTATCCCTAATCAGAACTGTGTGAACAAAAGTGGTCTTCCCCAACTGACCAGCAAAGCACCTTATATGAATAGACTTATCTTCTGCTGGGATGCTACGGAGGCCAAGGTCATCGCCTCATGGACATCCGCATTGCTGCTATTTTCCAGCAGATGCTGTAATTTAGATATCACCAAGTGA

Function

symbol description
kcna1a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendrite; main axon; and neuronal cell body. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; hindbrain; opercular flap; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in episodic ataxia type 1. Orthologous to human KCNA1 (potassium voltage-gated channel subfamily A member 1).
kcna1 Enables delayed rectifier potassium channel activity and disordered domain specific binding activity. Involved in several processes, including magnesium ion homeostasis; neuromuscular process; and potassium ion transmembrane transport. Located in juxtaparanode region of axon and paranode region of axon. Is integral component of plasma membrane. Part of voltage-gated potassium channel complex. Implicated in episodic ataxia type 1.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06357064_06359067.mRNA True 2245 mRNA 0.49 2 6356424 6359067

Neighbor

gene id symbol gene type direction distance location
CI01000055_06349198_06350625 KCNA6A coding upstream 4908 6348411 ~ 6351516 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 coding upstream 21838 6310117 ~ 6334801 (+)
CI01000055_06247679_06298687 CELSR1B coding upstream 56844 6247679 ~ 6299580 (+)
CI01000055_06238643_06245138 NA coding upstream 111107 6238643 ~ 6245317 (+)
CI01000055_06233829_06238021 NA coding upstream 118403 6233829 ~ 6238021 (+)
CI01000055_06377893_06381162 TMEM178B coding downstream 18687 6377754 ~ 6381215 (+)
CI01000055_06420746_06423701 NA coding downstream 61097 6420164 ~ 6424149 (+)
CI01000055_06424643_06428152 TNNI1AL coding downstream 65398 6424465 ~ 6428321 (+)
CI01000055_06432420_06434344 NA coding downstream 73353 6432420 ~ 6434486 (+)
CI01000055_06439930_06442140 NA coding downstream 80797 6439864 ~ 6442153 (+)
G240358 NA non-coding upstream 22876 6331331 ~ 6333548 (+)
G240453 NA non-coding upstream 155942 6200138 ~ 6200482 (+)
G240450 NA non-coding upstream 192753 6163361 ~ 6163671 (+)
G240444 NA non-coding upstream 220284 6135903 ~ 6136140 (+)
G240472 NA non-coding downstream 40926 6399993 ~ 6400807 (+)
G240473 NA non-coding downstream 42234 6401301 ~ 6401914 (+)
G240479 NA non-coding downstream 53787 6412854 ~ 6413389 (+)
G240481 NA non-coding downstream 55125 6414192 ~ 6414489 (+)
CI01000055_06487661_06489302 NA non-coding downstream 128938 6487661 ~ 6490167 (+)
G240344 NA other upstream 162524 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 267665 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 738833 5614065 ~ 5617591 (+)
G240099 NA other upstream 812612 5525472 ~ 5544153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G183687 LOC104952422,LOC104931204 non-coding NC_053129.1 CM020926.1 11545864 ~ 11548340 (+)
bowfin (Amia calva) AMCG00013690 kcna2b,kcna2,LOC108438074,LOC107673029,LOC104918376 coding CM030125.1 CM030125.1 38941253 ~ 38942746 (-)