CI01000055_06377893_06381162 (TMEM178B)


Basic Information

Item Value
gene id CI01000055_06377893_06381162
gene name TMEM178B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6377754 ~ 6381215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06377893_06381162.mRNA
ATTTAAAAGGGCATGTTTACAGCAAACACAACATTTCGCCTTTTTAACTCGAAAAAAAGATGCTCAAGCAGGATTAATTCGCTGCCTCGGTCAAAGGAGCTGTCCACCATGAGGTGCTGATCGGCGGCCTGGCAGAACGATGGCGACGGGGAAGTGGCTTCTGTACACGGGTCTCTGTTTGTCTCTCGTCGCCTTGTGTTTCCTGACAATCGCAATCTCATCGGATCACTGGTACGAAACGGACGCGAGGAGATACAAGGAACGTTGCCGAACTTTCTCGAACCGCAGAAGCGATCCGGGTTTTATTTACATCCCCAACCACAGCCTTCCACTGCGAGCCAGCCGAGTGAACCTGGACCGATGGGAGAACCGACTGCTGCTGACTAGAAACCGGCGTCAGCTGTTCGCGATGAGCGCGGCGGATGAGTGCAGCAGGCGCTACAATTCAACCAACATGGGGCTGTGGAGCAAATGCTACAGGGTGGGATTTGACCCAGACATCGAAGAGCTCGTTCAGAAAGGAACTATCGAGCGTTGCTCCTTTATAAAGTACTATTACTCCTCTGCAGTGACGCGAAAGGATCTTTCCTACAATATCACCAAGACTATCCAGCAAGATGATTGGCATGCCCTGCATTTGCGTCGGATGACAGCTGGCTTCATGGGCATGGCTCTATCCATCATTCTCTTTGGCTGGACCATTGGCGTTTTAGGCTGTTGCTGGCAGCAAGGCCTCATGCATTACGTTGCTGGTCTACTCTTCCTTATGGGAGGTACCTTCTGCATCATCTCTCTGTGCACCTGTGTGGCCGGCATCAACTTCGAACTGTCTCGCTACCCACGTTATCTGTTCAGCCTCCCGGATGATATAAGCCATGGTTACGGCTGGTCCATGTTCAGTGCCTGGGGAGGGCTGGGACTGACCCTCATAGCAGGGTTCTTCTGCACCCTGGCACCATCGATTCAGCCTCCCCCACCATCCCGTACCTCCTGTCCTAAGTCTCGTATGGAGAACGGAACGATCGTGTTTGAATTTCGAGACAAATTCACCATTTCAAAGATCTTTCCAATGTATGATTTACCATGAACTTCATTATGTGCTGTAATTGTTTTCAATGTCAATAATTTCTTCATTGGACA

Function

symbol description
tmem178b Predicted to be integral component of membrane. Predicted to be active in membrane.

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06377893_06381162.mRNA True 1140 mRNA 0.50 5 6377754 6381215

Neighbor

gene id symbol gene type direction distance location
CI01000055_06357064_06359067 KCNA1A, KCNA1L, KCNA1.S, KCNA1 coding upstream 18687 6356424 ~ 6359067 (+)
CI01000055_06349198_06350625 KCNA6A coding upstream 26238 6348411 ~ 6351516 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 coding upstream 43168 6310117 ~ 6334801 (+)
CI01000055_06247679_06298687 CELSR1B coding upstream 78174 6247679 ~ 6299580 (+)
CI01000055_06238643_06245138 NA coding upstream 132437 6238643 ~ 6245317 (+)
CI01000055_06420746_06423701 NA coding downstream 38949 6420164 ~ 6424149 (+)
CI01000055_06424643_06428152 TNNI1AL coding downstream 43250 6424465 ~ 6428321 (+)
CI01000055_06432420_06434344 NA coding downstream 51205 6432420 ~ 6434486 (+)
CI01000055_06439930_06442140 NA coding downstream 58649 6439864 ~ 6442153 (+)
CI01000055_06443549_06446405 BPGM coding downstream 62334 6443549 ~ 6446441 (+)
G240358 NA non-coding upstream 44206 6331331 ~ 6333548 (+)
G240453 NA non-coding upstream 177272 6200138 ~ 6200482 (+)
G240450 NA non-coding upstream 214083 6163361 ~ 6163671 (+)
G240444 NA non-coding upstream 241614 6135903 ~ 6136140 (+)
G240472 NA non-coding downstream 18778 6399993 ~ 6400807 (+)
G240473 NA non-coding downstream 20086 6401301 ~ 6401914 (+)
G240479 NA non-coding downstream 31639 6412854 ~ 6413389 (+)
G240481 NA non-coding downstream 32977 6414192 ~ 6414489 (+)
CI01000055_06487661_06489302 NA non-coding downstream 106790 6487661 ~ 6490167 (+)
G240344 NA other upstream 183854 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 288995 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 760163 5614065 ~ 5617591 (+)
G240099 NA other upstream 833942 5525472 ~ 5544153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024058 zgc:194665 coding NC_007136.7 CM002909.2 19999623 ~ 20003528 (+)