CI01000055_06420746_06423701


Basic Information

Item Value
gene id CI01000055_06420746_06423701
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6420164 ~ 6424149 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06420746_06423701.mRNA
TTATATAAAGTGCTCTTCTTTGAATACGATGGCCCAAATTAAAATTTCCTCTACATTGTGACTTCTCCGCCTTTCAAACACTTGGCACTCGTCACCTTTCCAGACTATGTTCTATGTGTGGACTGTAAGAATGTTTCCTAGGGACTTTACGCAAATCTGACGCACAGATTCATACGCTGAATGATTTGAAACACATTTGAGTTCACATATCTGGAGATCCATCACCTTTGTTATTGTGAAAAGGGAACATATAATTTATCATTTGGTCCATTTAAACACTTTATATGTGTTTTTAAATTCATTTAATGAGAACTCTTATAAAATATCTTCCATTTTTAGGGTCCATAAAGAGAAACAATCATGTCTGAAGGGTAAGTACTTTATTATTAGTAAGTACGTTATTATTAAAATTGTAAAGTGGATCAATTTATCTCTTTTGTTAATCCATTTTGGTGTTTCTTTTCTTTCCTTTATTGCTGTGCTCTTCATCATTGTAGACCTGTAAGTCACTTCCCTTTAGGCAATTTGTACAATAATTCATAAGATAAAGCAGGTCAAAAAAATTATTTGGAGTGATTAATCATGACTTGTATTGCTTTTCAGAAAAAAACAAAGTATACTGCCACAAGGCGGCTGTTCTTAAAAACCAAATTACTGCAGAAGGCCACATCTATGCTGGCAGTTGAAAAAGAGCAGAATAAAAGAGAAAGAGAGGATGCTCTTACTGAGAGGGTTCCTCCTCTCAAACTATCTGGTCTGTCTGTACAGGAGCTCCAGGAACTTTGCAAAGAACTTTCCCGCAAGATTGATGTCGTTGATGACGCCCGATATGATCTTGAAATTAAAGTGGCTAAAAATGAAAAAGAGATCCAGTCCTTGACCCAGAAGATTTGGGAAATGAAGGGTTCAAAGCAGAGAACCAAACTGAAGAGGGTTAAGAAGTCACATGATGCTATGTTTGGTGCTCTGACTGAATCCAAAATGGCATCAAAGGCAGATTTCAAGGCCAACCTAAAGACAGTAAAGAAAGAAGAAGAAAAGAAAGAAGAGGTGACTGACTGGCGTAAGAATGTGGAGGCCATGGCTGGAATGGAGGGCAGGAAGAAGCTTTTCACTGCTGCACAATAATAAAAAAAAAAAGGTACAAAGCAAATTTGTCACATTTACCTATGTTTGAGTGCTGTAAAAAACAAGCATTTTGACTGAACAATGACATTGTTTTCTTATTTTTCAGACTGATGTGTGCCAACGCAGGGAAACACACGTTTTGAAGAAAGAAAATCCAAACCAAATACAAATTTGATTTGTTATGTCAATCAAACACACACAGACACACACACACACACACACACAAAACTGTTTATAATGTTCATAGTTTAAGTGTTTTGTAGGTGATCTTAACTCTTAGTGTGTCTTTATCAGTCCCTGTGTTTTGCTGCAATTGTTGGACATTCTGTACAAATGCGTTTACATTTGAAACTAAATATGATATTTTGTGTATGATATGCTAAATGCATCGTAAATATAATCAGACTGGAAATTAATTGTATGCAATGTTAACTAGTGCTGTTCAGGA

Function

NR:

description
troponin I cardiac muscle

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06420746_06423701.mRNA True 1576 mRNA 0.36 5 6420164 6424149

Neighbor

gene id symbol gene type direction distance location
CI01000055_06377893_06381162 TMEM178B coding upstream 38949 6377754 ~ 6381215 (+)
CI01000055_06357064_06359067 KCNA1A, KCNA1L, KCNA1.S, KCNA1 coding upstream 61097 6356424 ~ 6359067 (+)
CI01000055_06349198_06350625 KCNA6A coding upstream 68648 6348411 ~ 6351516 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 coding upstream 85578 6310117 ~ 6334801 (+)
CI01000055_06247679_06298687 CELSR1B coding upstream 120584 6247679 ~ 6299580 (+)
CI01000055_06424643_06428152 TNNI1AL coding downstream 316 6424465 ~ 6428321 (+)
CI01000055_06432420_06434344 NA coding downstream 8271 6432420 ~ 6434486 (+)
CI01000055_06439930_06442140 NA coding downstream 15715 6439864 ~ 6442153 (+)
CI01000055_06443549_06446405 BPGM coding downstream 19400 6443549 ~ 6446441 (+)
CI01000055_06472841_06481094 NA coding downstream 48692 6472841 ~ 6481156 (+)
G240481 NA non-coding upstream 5675 6414192 ~ 6414489 (+)
G240479 NA non-coding upstream 6775 6412854 ~ 6413389 (+)
G240473 NA non-coding upstream 18250 6401301 ~ 6401914 (+)
G240472 NA non-coding upstream 19357 6399993 ~ 6400807 (+)
G240358 NA non-coding upstream 86616 6331331 ~ 6333548 (+)
CI01000055_06487661_06489302 NA non-coding downstream 63856 6487661 ~ 6490167 (+)
G240355 NA non-coding downstream 72520 6496669 ~ 6498737 (+)
G240315 NA non-coding downstream 77903 6502052 ~ 6508423 (+)
CI01000055_06513312_06529035 NA non-coding downstream 88535 6512366 ~ 6529510 (+)
G240550 NA non-coding downstream 216479 6640628 ~ 6641114 (+)
G240344 NA other upstream 226264 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 331405 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 802573 5614065 ~ 5617591 (+)
G240099 NA other upstream 876352 5525472 ~ 5544153 (+)

Expression


Co-expression Network