CI01000055_06424643_06428152 (TNNI1AL)


Basic Information

Item Value
gene id CI01000055_06424643_06428152
gene name TNNI1AL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6424465 ~ 6428321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06424643_06428152.mRNA
GTATAAAAATGAAAAGAAACAACAAATACCCTGATTCATTTCTTTATGTTATATTCCAAAATAAATCAATCAATCAATTCAAATTCTCTAGGCTCTGTGGTCACTTTTAGTTGCAGTCATGGTCATACAGCTACTGGCCGACTTCAGCAAAGCCTTTTCTGCCTTGTAGGGTCAAACAATGGGGAATGAAGAGGGACTGGCAGTGGACAATGTTTTTGACTTTCAGATTTTTGATTTGCAATTAGAAGGTCACAATGTCAGAGTCACAAAGCTCCTGAAGAAAGCAACATCTATGCTTGTAACTGAAAAAGAAGAGAAGCAGAGGGAGAGAGAGACCACCTTGCGTGAAAGAGTGCCACCTCTACAGCTGTCCGGTCTGTCTGTTCAAGAGCTTCAGGCTCTCTGCAAAGACCTCCATCAAAAGATTGATGTTGTAGATGAAGAAAGATATGACATCGCGGCCAAGGTTTCCAAAAATGAAAAGGAGATTACAGATTTGAACATCAAGATTACCGAACTTAGAGGCAAAATGAAGAGACCTGCACTGAAGAGGGTGAAGATCTCTGCCGATGCCATGTTGGGCGCTCTTCTGGGCTCCAAGGTCAAAGAGTCTGTGGATTTCAAAGCCAACCTCAAGACAGTCAAGAAAGAAGAGGAGAAGAAAGAAGAGGTGACTGACTGGCGTAAGAATGTGGAGGCCATGTCTGGAATGGAGGGCAGGAAGAAGCTGTTTGATGCTGGACAATAGATGGTACATTTAAAAAATGCATTGTTTTTCAATGATCTTTATGTTTAGGATGTCTTACATTAAATATTTCACCTTGAGTTTCAGCACTGAATTTTAATTTTTTTTCTTACAGATTGCAACTACATGAGATCTGACATCAGAATTGAGGAATTCACAAAAACATCTTAAA

Function

NR:

description
troponin I cardiac muscle

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06424643_06428152.mRNA True 917 mRNA 0.40 6 6424465 6428321

Neighbor

gene id symbol gene type direction distance location
CI01000055_06420746_06423701 NA coding upstream 316 6420164 ~ 6424149 (+)
CI01000055_06377893_06381162 TMEM178B coding upstream 43250 6377754 ~ 6381215 (+)
CI01000055_06357064_06359067 KCNA1A, KCNA1L, KCNA1.S, KCNA1 coding upstream 65398 6356424 ~ 6359067 (+)
CI01000055_06349198_06350625 KCNA6A coding upstream 72949 6348411 ~ 6351516 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 coding upstream 89879 6310117 ~ 6334801 (+)
CI01000055_06432420_06434344 NA coding downstream 4099 6432420 ~ 6434486 (+)
CI01000055_06439930_06442140 NA coding downstream 11543 6439864 ~ 6442153 (+)
CI01000055_06443549_06446405 BPGM coding downstream 15228 6443549 ~ 6446441 (+)
CI01000055_06472841_06481094 NA coding downstream 44520 6472841 ~ 6481156 (+)
CI01000055_06487661_06489302 NA coding downstream 59340 6487661 ~ 6490167 (+)
G240481 NA non-coding upstream 9976 6414192 ~ 6414489 (+)
G240479 NA non-coding upstream 11076 6412854 ~ 6413389 (+)
G240473 NA non-coding upstream 22551 6401301 ~ 6401914 (+)
G240472 NA non-coding upstream 23658 6399993 ~ 6400807 (+)
G240358 NA non-coding upstream 90917 6331331 ~ 6333548 (+)
G240355 NA non-coding downstream 68348 6496669 ~ 6498737 (+)
G240315 NA non-coding downstream 73731 6502052 ~ 6508423 (+)
CI01000055_06513312_06529035 NA non-coding downstream 84363 6512366 ~ 6529510 (+)
G240550 NA non-coding downstream 212307 6640628 ~ 6641114 (+)
G240344 NA other upstream 230565 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 335706 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 806874 5614065 ~ 5617591 (+)
G240099 NA other upstream 880653 5525472 ~ 5544153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024060 tnni4b.2 coding NC_007136.7 CM002909.2 20089986 ~ 20099773 (+)