CI01000055_06439930_06442140


Basic Information

Item Value
gene id CI01000055_06439930_06442140
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6439864 ~ 6442153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06439930_06442140.mRNA
ACATAAAGTGCATTTCAGCACCAGCTGCTCTGTCACACTAAATCCTGGGATGCAAAGCATTTGACAATGATAATGGTGCGGACAGTGGTCTATTTTAGTGAGCCTCTTACGAGTGCATCAGAATCTATAAATCTGCAGAGTTTCTTCTTTGTGGCCAAAACTAAGTCATACTTCCATCATCTTAGAGGGTCACATTGTTGTATATTTCATATCGGCTCTCTTCTTCAGAGAAAGCCCAAGATTTCAGCATCTCGGCGGTTATTTTTAAAGACCAGAATACTGAAGAAGGCCGGCATACTGCTGGCAGAAGAGAAGGAACAGAAAAAGATTGACCGAGAACAAACTCTCAGTGAGAGAGCTCCTCCTCTCAAACTGCCTGGACTGTCCGTACAGGACTTACAGAATCTGTGCAAAGACCTTCATCAAAAAATTGATGTTGTTGATGAGGAACGATATGACATTCAAGCGAAAGTTTCCAAAAGTGAAACGGAGATAGCAGAATTAAGCCACAAAATCTTTGAGCTGAAGGGCAAAATGAAGAGACCTCCCCTAAAGAGAGTGAGGGTGTCTGCTGAAGCCATGCTGGGGGCTCTGCTAGGTTCCAGACACAAGGAATCCATCGACTTTAAAGCTAACCTCAAGACTGTCAAGAAGGAGGAGGAAAAGAAAGAGGAAGTGACCGACTGGCGTAAAAATGTGGATGCCATGTCAGGCATGGAGGGCAGGAAGAAGCTGTTTGCAGGACCAACTTCTTAATGAATTATTTCAA

Function

NR:

description
troponin I cardiac muscle

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06439930_06442140.mRNA True 769 mRNA 0.44 6 6439864 6442153

Neighbor

gene id symbol gene type direction distance location
CI01000055_06432420_06434344 NA coding upstream 5378 6432420 ~ 6434486 (+)
CI01000055_06424643_06428152 TNNI1AL coding upstream 11543 6424465 ~ 6428321 (+)
CI01000055_06420746_06423701 NA coding upstream 15715 6420164 ~ 6424149 (+)
CI01000055_06377893_06381162 TMEM178B coding upstream 58649 6377754 ~ 6381215 (+)
CI01000055_06357064_06359067 KCNA1A, KCNA1L, KCNA1.S, KCNA1 coding upstream 80797 6356424 ~ 6359067 (+)
CI01000055_06443549_06446405 BPGM coding downstream 1396 6443549 ~ 6446441 (+)
CI01000055_06472841_06481094 NA coding downstream 30688 6472841 ~ 6481156 (+)
CI01000055_06487661_06489302 NA coding downstream 45508 6487661 ~ 6490167 (+)
CI01000055_06513312_06529035 NA coding downstream 70213 6512366 ~ 6529510 (+)
CI01000055_06530845_06542679 NA coding downstream 87838 6529991 ~ 6542725 (+)
G240481 NA non-coding upstream 25375 6414192 ~ 6414489 (+)
G240479 NA non-coding upstream 26475 6412854 ~ 6413389 (+)
G240473 NA non-coding upstream 37950 6401301 ~ 6401914 (+)
G240472 NA non-coding upstream 39057 6399993 ~ 6400807 (+)
G240358 NA non-coding upstream 106316 6331331 ~ 6333548 (+)
G240355 NA non-coding downstream 54516 6496669 ~ 6498737 (+)
G240315 NA non-coding downstream 59899 6502052 ~ 6508423 (+)
G240550 NA non-coding downstream 198475 6640628 ~ 6641114 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other upstream 98699 6310117 ~ 6334801 (+)
G240344 NA other upstream 245964 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 351105 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 822273 5614065 ~ 5617591 (+)
G240099 NA other upstream 896052 5525472 ~ 5544153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) LOC103028890 tnni1al,LOC103028890,LOC108416834,LOC101068009,LOC107661482,LOC107753697,LOC107661481,LOC107574299,LOC107590807,LOC107753570 misc NC_035920.1 CM008323.1 40606871 ~ 40611720 (+)