CI01000055_06487661_06489302


Basic Information

Item Value
gene id CI01000055_06487661_06489302
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6487661 ~ 6490167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06487661_06489302.mRNA
TTATAGTCATGTCTGACACAGAAGATGTGATGGATGATGGGGCTCAGTATCTATCAAATATCCAAGCACCAAAGATTCCAGAGGGAGAAAAAGTGGATTTTGATGAGAAGAGGCGAGCAGAGAGGGCCGAGCAGCAGCGAGTAAGAGCAGAGAGAGAGAAAGAGCGTCAGGCCAGACTCGCCGAAGAGAGAGAGAGGAAGGAGCAGGAAGAGCAGAGAAAGAAGCATGATGAGGATGCCAAGAAGAAGAAAGCTCTCACTAACATGACCCATCAGTACGGCGGCGTGCAGCAAAGGGGTGAAGGACGCAAAGGTGCCAAGAAACAGACTGAAAGGGAGAAAAAGAAGAAGATCCTGGCTGACCGCCGAAAACCACTGAACGTTGAACACCTGAGTGATGACAAACTCAAGTACGACAGATTTTCATATGCATATTCTTGGCATCACTTAATAGAAAACACCCAGAGTGATTTTCTTAATTATTAACAGTATTTTTCCTTTGTTGTTGTTGTTGTTGAGGACAGACCCAGAAACAGGACTACAGGAAATAGTTCATTACTTAGAACTAGA

Function

NR:

description
slow myotomal muscle troponin-T isoform 1S

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06487661_06489302.mRNA False 569 mRNA 0.45 5 6487661 6489386

Neighbor

gene id symbol gene type direction distance location
CI01000055_06472841_06481094 NA coding upstream 6505 6472841 ~ 6481156 (+)
CI01000055_06443549_06446405 BPGM coding upstream 41220 6443549 ~ 6446441 (+)
CI01000055_06439930_06442140 NA coding upstream 45508 6439864 ~ 6442153 (+)
CI01000055_06432420_06434344 NA coding upstream 53175 6432420 ~ 6434486 (+)
CI01000055_06424643_06428152 TNNI1AL coding upstream 59340 6424465 ~ 6428321 (+)
CI01000055_06513312_06529035 NA coding downstream 22980 6512366 ~ 6529510 (+)
CI01000055_06530845_06542679 NA coding downstream 40605 6529991 ~ 6542725 (+)
CI01000055_06716393_06716976 KXD1 coding downstream 227007 6716393 ~ 6716976 (+)
CI01000055_06718992_06719248 NA coding downstream 229606 6718992 ~ 6719559 (+)
CI01000055_06720233_06726592 ERGIC2 coding downstream 230484 6719870 ~ 6727509 (+)
G240481 NA non-coding upstream 73172 6414192 ~ 6414489 (+)
G240479 NA non-coding upstream 74272 6412854 ~ 6413389 (+)
G240473 NA non-coding upstream 85747 6401301 ~ 6401914 (+)
G240472 NA non-coding upstream 86854 6399993 ~ 6400807 (+)
G240358 NA non-coding upstream 154113 6331331 ~ 6333548 (+)
G240355 NA non-coding downstream 7283 6496669 ~ 6498737 (+)
G240315 NA non-coding downstream 12666 6502052 ~ 6508423 (+)
G240550 NA non-coding downstream 151242 6640628 ~ 6641114 (+)
G240555 NA non-coding downstream 161679 6651065 ~ 6651326 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other upstream 146496 6310117 ~ 6334801 (+)
G240344 NA other upstream 293761 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 398902 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 870070 5614065 ~ 5617591 (+)
G240099 NA other upstream 943849 5525472 ~ 5544153 (+)

Expression


Co-expression Network