CI01000055_06513312_06529035


Basic Information

Item Value
gene id CI01000055_06513312_06529035
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6512366 ~ 6529510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06513312_06529035.mRNA
ATATAAATGAAAACAAATAATAATAAGACGTGAATTCAGGCTTAGTTTGGAGCACGTACTTACTGTTCCTGACAGCACCGATGAAAATGATCAAAACTGACACTGCTGTTTTCAATATTTGGGCCGTACAACACGACTCGCAATCCTATTGGTCCAGCTCTGTACCACGTGATCTTTACATGACCCAGACACCAAAAGAACTCACTGTTGCGTTGTATTTACGCAGAGCCAAGAGGAAGATATCCTATTACATTTAATTAAAGTTTTCTAAACTAAACTAAACTCTTATTCCTGATATTATTTACACAAGGGCAAAGACAAACTTTTATTATTTTTAGTATAATAAAAACATTTAAGAAGTGATTCTGTTTCAGTTAAAAAGTAGATTAGGCCAAGAATCTGTGCATAAAAATTAAAAAAAATATCAATATAATTAGAATTTTGTCTCAGATGAAAAGATTGGGTAATTTCAAAACTACAGTAGTGCTTAAGATTGTGATATGACAGGCGGTTTTCCTTTTTTTAAAAAAAATAATAATAAACTTTTAAATTAGAAACTAAGTCTTATTTTCGACATATTTACATTTTTGCATACTAAATGTAGCTAATAGAAGTAGCATATTAATTAAATAATATTCATAAGTGAAAAAAAAAATTCAAAACAAAGTTGAATTATTATCACTAATAAATAAACAGAAATTTGACCAAAAACAGGCCGACTGAGGACAATTCCAAAATAAGTCAAAGCCTTTTTACGCATCTGTCAGTATCATAATTAAATGTGTTTCCAGGGTTTATTTTATTTTTATATTATTTTTACATTTAATTTTTACATTTATTTATTTTACATGCATTTTTATTTTTACATTAAATATTTACGAGGCGGTTTCCAAATTTGTTTCCAGATATGACAGGCTTATGACAACAGCTGCAAATCTTAGCCATGATGTCATTACGTTTCCCACAATGCCTCAGCAGCAAAACAACGCACGCGCCGTGCGCATTTCTCAAGCGTCTCTCAAAGATGGCGGGTGTCCCCGATCCACTGGAAGATATGCTGTACTCCGAAGTGGACGAAAAAGCCGTCAGTGACCTCGTAGGCTCGTTAGAATCGCAGTTGGGTGGACAAAACAAAGCGGTGGGTCCTCAAGGCGACATCAGGAGACCCCCAAACGCGCTAAATCCACACTTGGGGAAATTACTGCCCGCCCAAGTAGGAACAACACTGGAGCAGCAGCGGCAGCCACAGCGAAACCAGGAGGGAAACTCTCAAGAAAACGGTCCGGATAGGATACCGGCGTCCAGTTCTGTCCCCTCCACCTCGAACTTGCCCAGTACCTCTGCGAATTTAGTTACTGCCGCGAACCGGGTGCAATATCATTCATCAAATCCATCAACTTGTTCAAGTGACGCAGCACCAACAGACTCTCATCCCAATACAAATCACATTGCGTCTGCTGTCCGGACGGTTCCCGCCAGAATACAGACTGTGAACGGAAGCAGTGGCACGTTAAACTCTTCTGTTATCGCTTCCGCGCCTGCTTCTGTAAACGGTATTGACATTGGTTCAGGTGTAGGTAATGGTAAAAGCAACATGTCTGCTCCTACTAGTACAAATACTGCTTTTGTGTCCGCTCAGCCCAACAGCACACTGCCACATGCGACTGTGTCACTAGATAGTCAAGCAAACCCCACTATTGCACTGCACAGGCCTCCTAACACCATCACAAGTGTCGTACACAACGGAGGTGACCCTAAAGTCTCAGGATTGCCCATGCAGGGCACCGGTCTTGTCTCCACCTCTGTGGCGTTCACAAACACAGAGCCCAAATCTGACCCTCAAAACCAGATTAAAGCCATCGTCCCGAACCAGCTCCCCGGGGCTCCCGTAGGTTTGCACCCCAGTACGCCCACTCAAATTATTGTGTCGTCCAGTGCAGTGGTGACCTCACTTCCTGTGGCTAGCACACCCTCTGTTCTTGCAAAGCCAGCAACAACCACTCTCGTAGGACAGCCTACGACCCTGTTGAGACCTGGTACGCCCACTCAAGTGACGGCGACCGCGGCGGCCCCGCAGCGACCTGGGGCACCTGCGACCCAGCTGATTGTCAGGCCGCAGCAACAAACTACTATTCAGTTACCGCCAGGATTCACCATACCACCAGGTATGGTGCTGGTACGTACGGAGGCTGGTCAGCTGGCGTTGGTTCCTCAGCAGGTCCTGGCCCAGGCCAAAGCTCAGAACCAAAATAAAGCCACCATGTCACCGAGACCTGCTACACCCACTGCTGGAGCGGCTTTCAGAGTCACCACACCTGTTGCCCAGCAGAAGACAGCAGTGGTAACAATTACCTCGGCTCAGAAGCCCACCACAACAGTCATTACAGCAGGGGCCCGCGTGCAGCCTGCACCACAGACAGTCCTCAAGCCCTCTGTGACCCCTCAGAGTCCCAGCACCACCACCACCTCTGCTGCTGCCCCAGCTAACAGAGCCCCTGTCCTCTCTCAGGAAATGCAAGAGAATGTAAAGAAGTGCAAGAACTTCCTAGCAACGCTCATCAAACTGGCATCCCATAACTCCCCCTCCCCGGAAACATCTCGGAATGTGAAGGCACTAGTGCAGGATCTGCTGGCTGTTAAGAGGCCTGGGCTTCAGGCTACTCCGACACGGATGCCGGTGGTGATTACGCAGACGATTCGTGCTCAAGGTGCTGTTGGGACACACTTGCAAGTGAGGAACCCCATGAGTGTGGCTTTTCAAGCCTCGGCCAATCAGAAACAGAAGCTAAATGACCCTGGGGGTGGCACTTTCAGGGATGATGACGACATCAATGACGTGGCATCCATGGCTGGTGTGAACCTTAACGAGGAGAACGCCCGTATCTTGGCCACGGGTTCGGAGCTGGTGGGCACCCAGATCCGTTCCTGTAAGGACGAGGCCTTCCTTCCTGCCAGCCTGCTCCACAAACGTCTCCTGGAGACCGCCAAGAAGTTCGGCGTGACGGAGGTGTCAATGGAGACGGTCGCTCTCATTTCTCACGCCACTCAGTCCAGGCTGCGCTCCATGCTGGAGAAAGTCTCGGCCGTTGCGCAACACCGCGCCGACTCCTGCAAAGATGAGGAGCTGTACGAGCAGGCGTCGGATGTGCGGACCCAGCTGAAGTTCTTTGAGCAGCTGGAGAAGATCGAGAAGCAGAGGAAAGACGACGAGGAACGGGAGCTACTAATGAAAGCCGCAAAAGTAGGTTTGAGTGATGCGGGAGTGGCCGTCGGCGCCAGTCTGCCCATCAGCGCCTTGCCAATGAACGCTGGCTTTTCCCGCACGCGTTGGCCACTGTTTAAAAGAAAACCGGTTGTGCTTTTAAGCCTCGGAGAGAAAAGACAGTGTTATTAAGACACAAGATTGCACTCTGCAGCTTCATACTGTAGCAAATTGCAGTAATGGCAAAGCCAGAGGGATTTATCCAGTCTCGAGTTGATTTGATTGTACTGTTGCCTGGACTGGAGTACATCAGGGGAAAGGGAATGAGTCTTCTGTTAGGGAGCGAGAGAGGATGTTTTAAATTTGCCTTGAAGTTGCTTTCTTTCTAAGGAAGTGACACTATCTCACTCACTGAGTTTGTTGGGAAAAAATCATGTTATATGTAATGGATGAACCTTAAGGCATCACTACCTTTACCTTTTTGGCACTAATCAAGTGAACACTGCTTATAAATTAATCAAGACTACATGGCTTTTTAAAAGCCATATAGCCAGACATGAGGAATTTTCTGGGTTCTAAACAAGTTAAGTGCATTCAGCAGGGATGGACTTATGGGGTGGTTTGCAATACTAAATTTCTATATTTAAAATGCAGGAATCCACTGATA
>TU272928
CAAACTTTTATTATTTTTAGTATAATAAAAACATTTAAGAAGTGATTCTGTTTCAGTTAAAAAGTAGATTAGGCCAAGAATCTGTGCATAAAAATTAAAAAAAATATCAATATAATTAGAATTTTGTCTCAGATGAAAAGATTGGGTAATTTCAAAACTACAGTAGTGCTTAAGATTGTGATATGACAGGCGGTTTTCCTTTTTTTAAA

Function

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06513312_06529035.mRNA False 3869 mRNA 0.47 9 6512366 6529510
TU272928 True 209 lncRNA 0.25 1 6512684 6512892

Neighbor

gene id symbol gene type direction distance location
CI01000055_06487661_06489302 NA coding upstream 22980 6487661 ~ 6490167 (+)
CI01000055_06472841_06481094 NA coding upstream 31210 6472841 ~ 6481156 (+)
CI01000055_06443549_06446405 BPGM coding upstream 65925 6443549 ~ 6446441 (+)
CI01000055_06439930_06442140 NA coding upstream 70213 6439864 ~ 6442153 (+)
CI01000055_06432420_06434344 NA coding upstream 77880 6432420 ~ 6434486 (+)
CI01000055_06530845_06542679 NA coding downstream 481 6529991 ~ 6542725 (+)
CI01000055_06716393_06716976 KXD1 coding downstream 186883 6716393 ~ 6716976 (+)
CI01000055_06718992_06719248 NA coding downstream 189482 6718992 ~ 6719559 (+)
CI01000055_06720233_06726592 ERGIC2 coding downstream 190360 6719870 ~ 6727509 (+)
G240315 NA non-coding upstream 3943 6502052 ~ 6508423 (+)
G240355 NA non-coding upstream 13629 6496669 ~ 6498737 (+)
G240481 NA non-coding upstream 97877 6414192 ~ 6414489 (+)
G240479 NA non-coding upstream 98977 6412854 ~ 6413389 (+)
G240550 NA non-coding downstream 111118 6640628 ~ 6641114 (+)
G240555 NA non-coding downstream 121555 6651065 ~ 6651326 (+)
G240557 NA non-coding downstream 123984 6653494 ~ 6653702 (+)
G240561 NA non-coding downstream 128016 6657526 ~ 6657809 (+)
G240563 NA non-coding downstream 140654 6670164 ~ 6670368 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other upstream 171201 6310117 ~ 6334801 (+)
G240344 NA other upstream 318466 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 423607 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 894775 5614065 ~ 5617591 (+)
G240099 NA other upstream 968554 5525472 ~ 5544153 (+)

Expression


Co-expression Network