XLOC_009995 (dcst2)


Basic Information

Item Value
gene id XLOC_009995
gene name dcst2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28727383 ~ 28754071 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019894
GATGTCTATGAGATTTATGATAGCAAAATGTATTATTACGAGCTTCATAAGGAACAAATATGAAAACTGATTATATTTTTCACTGAAGACCAGTTACAAGCACAACAAGATTTTCAGGATGACTCCACAGGAACCTGTTTTGACGTCTCTCAGGAGGAAACGGTTGCGGAGGAGTTTGGCGGTGCGGCAGGTGAAGCGCAGTCTCACTGGGTTTGCTCTCGGTCTGTTCCTCGCATCAGTTTACGGGGTCACGGCGCTTTACATCCAACATCACGACGTTTGGTTCTGCGTCATCAGCACCGCCATCCTGGCCGTTTTCGTGGGGTTTGGAACTGGTCTCTCCGAGCGCGTGCGCACAAATGTCATGCTGATGTTTCCAGTGCTGTGCTCGATGAGAGGTAAAAATTTGCTTCTTTTCTTCATCTGTACCTTGGTGATCCACGGTCCTGTGAGCAACACGATGGAGAATGTTGAACGGGCAGCAGACAGTGTGATCTGTGGCACAGAACTTACCATGAACCAGACACAACAACTCCTGCAGCGTGCTGCCAACCCACTGCTGCCGGCCCTGAATAAGATCAAGGAAATGGCGAGGAATGCTTACTCGATGGCAGGCCGAGCACAAAACTTCATCATGGCTCTTAGTGAATCTGTTCGGCACGTTGCTCGTACTCTAAGAAACGTATTGCACTTTCTGGCAGATATCGGCGACGCGTGTAATGACAATCTGGGTCTGCCTTATGAGAAGTGCACTGGGTTATTTGATGAAGCCCGTGAGAACTGCATGGAGCTGCTGTCTGTGTTTTCATTTTTCTGCCACCTCCTGGATGGTTTCCAGTCTCTCTGCGGACTCGCACGCGTGGGACAGCTGTTCTGCATCTTGCCATCATACATTGCAGAACACTTGAAGACCACTCTGGCTTACCCAACCATTGCAGCCTTTGATCGAATTAAAAAAGAGTTTGAATTCAACATTTCTACATCCATCAACTTTACGCTTCTCATGAACAGCAGTCAGTCCATGCAGGACGCGGCTCAGCAGATCATGGAGGAGGTGTCTGAAGAGCTGGTGCTCCTGCAGGAGCTCAAGGCCTTGCTGACATACACAGGCTTCTTCATGCTTCTCTTCATCTATGTCCAGGTCGTTCTGTACAAAAATAAGTACCTCCATAACGATGAATTCGAGAACTTCTACATAACAGACCAGTTCATTGAGCTGGACAAGAAGTGCTCCAGACAAGGCAAAGCTACAGTACTTCCTCTCAGCCACAGAGAAGCTCTCACCTACATCAGGCCCTACTCTTTGTATCTGACAGTGAGGGAAAGACGAGCTATAGCAGGTCAGATGTTGTCTTTGCTCAGGTTTATGGTCATGACCATCGTCCTGATAGCTGTTGACCTCATGGTGTTCTGGATGTTCGAGCTGGTTCACCACCTGGCCCAGGGTGAAATCGTGGCACAAGCTCCAGTAGTTGTTGCAGTACAAGTTAACGGATCTGGTTATGCCTCAGATATCTTCCGGGACATTGCAGCCTCATTTGACATCTTGCAGAAAGGAAACATCACTGTGATAAGCAAGAAATGTCTCGTGAAGCCTTCGGAGCCTGATTACATGAGATACCTGCTCATTGGTCTCCTTTATGGCTTCACCTTGTTTATTGTGATTGCTGGTGGCTACATCAAACGTTTAAAGAGGTTTGTGTGTGCCAGGTACCATCCCGAAAGAGAAAAAAAGAGGATTCAATACCTTCACAAGCATATTCTCACTCAGCGTGGGTCTTTGGGAAAAGCATTAATGAAGGCTTTACAACGTAACAAGGTAGACCAGCAACAAGGTGGCATTATGCAGGCACTGGCCAAACATCTGCCAGGGGGTTCCATCATAGCCAGGCTCCTGGATATTGGGAAAGAATCTTGCATGGCTTGTGGGAAAGTGTTGGAGACAAGAGGTTGTGATGATGAAGTGCACATCTGTCCTACCCCTCGCTGCACAGGCCGTTACTGTTTGCTGTGCTTCAAACTGATGGGGGAAATCTGTGTTTTCTGCACAGGAGCCCTAACAGTTCAAGAGGAGCAAGAACTAGACTCCAGTGATGAGGAGCAAACCAGTTTATGGGAACCAGCTGAAACTTTACCTCAGAGCACAAAGGAAAAGAGTGCAAAGATCAGTATCTCTGATCAGGATCATTCCGTATGGATCAATGGCCAAAGTAGCAATCAGAATACGGAGGCTATTAACATAATCTAAGGCAAAATATGCTTTATGCTGTATATTTGGTGTGTTGAAAGCATTCGGGTATATGGTCGTGAATAAATGTGCTACAACAGA

Function

symbol description
dcst2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DCST2 (DC-STAMP domain containing 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070809-6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DCST2 (DC-STAMP domain containing 2).

Ensembl:

ensembl_id ENSDARG00000088693

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019894 True 2329 mRNA 0.47 16 28727383 28754071

Neighbor

gene id symbol gene type direction distance location
XLOC_009994 NA coding upstream 60050 28660395 ~ 28667333 (+)
XLOC_009993 crot coding upstream 99815 28601974 ~ 28627568 (+)
XLOC_009992 acbd7 coding upstream 128055 28596555 ~ 28599328 (+)
XLOC_009991 nmt2 coding upstream 135842 28578352 ~ 28591541 (+)
XLOC_009990 fam171a1 coding upstream 152594 28547157 ~ 28574789 (+)
XLOC_009997 s100v1 coding downstream 332 28754403 ~ 28760006 (+)
XLOC_009998 trim33l coding downstream 9946 28764017 ~ 28790417 (+)
XLOC_009999 zgc:171704 coding downstream 38087 28792158 ~ 28796865 (+)
XLOC_010000 chtopb coding downstream 127164 28881235 ~ 28887159 (+)
XLOC_010001 si:dkey-239n17.6 coding downstream 149703 28903774 ~ 28991376 (+)
XLOC_009989 CR936250.1 non-coding upstream 339220 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 356053 28270015 ~ 28371330 (+)
XLOC_009986 NA non-coding upstream 677355 28049554 ~ 28050028 (+)
XLOC_009984 NA non-coding upstream 854016 27839927 ~ 27873367 (+)
XLOC_010005 NA non-coding downstream 457291 29211362 ~ 29230847 (+)
XLOC_010006 NA non-coding downstream 491809 29245880 ~ 29250848 (+)
XLOC_010014 NA non-coding downstream 837048 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 967556 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 1149573 29903644 ~ 29908970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07529488_07537870 DCST2 coding CI01000027 null 7529488 ~ 7539111 (+)