XLOC_009997 (s100v1)


Basic Information

Item Value
gene id XLOC_009997
gene name s100v1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28754403 ~ 28760006 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019896
TAGCCGCGCGCTCGTGAAGAGTGGGCGTGTCGGGGGCGCGCAAAGCTACACTGGTCAGGTGATGAAATACCTTCACTTCTCTTCACCTGCTCTAGTTTCCGCACGGGACTTGAAACCAGCCCAATGGCGACAGAGTACACAGATCTAGAGTTGGCCATCAACACCTTGGTAACAAACTTTTACTCAGCATCACCGAATAATGCTGATTCGCTCACAGCCCAGGAGTTCCAGAGCATGCTCTCCAAAGAGCTGCCCACCATGGTGAAAACAGCAGGGGACCAGGAAGGACTCAGCAAAATCCTGAAGGATTTGAACGTGGAAGAAGGGCAGGGCATCACATTCAAGGATTTTTGGCAACTGGTTGAGTCTCTGGCCAATAATCAATTTGGATTGCAGAGCAAAGAGAAGCAGGTGAAATGTGTGAAATGCAGTCTGATGTAAGACCGGCCCTGAGCAAACAAGACCGTTCAACATTACGTAGATGTCCGCCACTGCCCTGAGAAAACACGTCCAATCTGTCACTCCTATTTCCCATCATTCCTCTGCATTTTTCTGCTGGTCGCTGAGGTCTTATCATAATTAGGTGTCACAAGGAGCTTCCTGAATAAATACCCCTCAAGCTCTTATGAAACAGACCGCCAGTATAATCTCTATCATCAGTGTAACCTGAGCCACACCTGCTCGGCCAGATAGCATAAGATCCAGTGGCACGTTTATTTCCTTATTTGTTCTGGTGCTGCaggtttttgtgtttgtgtgtcacttTTAGCCTGCTcaatattttaactatattttttatacacttaattggaaaaaaaagtttttatgtgaCAATTGTGATCGTATTTGTTTGTGCTGACTGACATGAATTCATAAACAGATAATGTGAAGTATTTTAGAGGGAAATAGAGATGACACGACATATTCTGTACTGTATTTGGGTTTATGGTAACACAATGTAATTTTCTGtgttgatattattaaatatgtgcAAA

Function

symbol description
s100v1 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; gut; head kidney; and spleen. Orthologous to several human genes including S100A14 (S100 calcium binding protein A14).

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080407-1 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; gut; head kidney; and spleen. Orthologous to several human genes including S100A14 (S100 calcium binding protein A14).

Ensembl:

ensembl_id ENSDARG00000070427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019896 True 995 mRNA 0.44 3 28754403 28760006

Neighbor

gene id symbol gene type direction distance location
XLOC_009995 dcst2 coding upstream 332 28727383 ~ 28754071 (+)
XLOC_009996 si:dkey-24i24.3 coding upstream 17229 28728347 ~ 28737174 (+)
XLOC_009994 NA coding upstream 87070 28660395 ~ 28667333 (+)
XLOC_009993 crot coding upstream 126835 28601974 ~ 28627568 (+)
XLOC_009992 acbd7 coding upstream 155075 28596555 ~ 28599328 (+)
XLOC_009998 trim33l coding downstream 4011 28764017 ~ 28790417 (+)
XLOC_009999 zgc:171704 coding downstream 32152 28792158 ~ 28796865 (+)
XLOC_010000 chtopb coding downstream 121229 28881235 ~ 28887159 (+)
XLOC_010001 si:dkey-239n17.6 coding downstream 143768 28903774 ~ 28991376 (+)
XLOC_010002 gon4l coding downstream 234703 28994709 ~ 29024769 (+)
XLOC_009989 CR936250.1 non-coding upstream 366240 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 383073 28270015 ~ 28371330 (+)
XLOC_009986 NA non-coding upstream 704375 28049554 ~ 28050028 (+)
XLOC_009984 NA non-coding upstream 881036 27839927 ~ 27873367 (+)
XLOC_010005 NA non-coding downstream 451356 29211362 ~ 29230847 (+)
XLOC_010006 NA non-coding downstream 485874 29245880 ~ 29250848 (+)
XLOC_010014 NA non-coding downstream 831113 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 961621 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 1143638 29903644 ~ 29908970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G142307 NA non-coding CI01000027 null 7539471 ~ 7542955 (-)