XLOC_009998 (trim33l)


Basic Information

Item Value
gene id XLOC_009998
gene name trim33l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28764017 ~ 28790417 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019897
GCCCAAGCTAAAAAAAGTTCTAGGAAGAAACTGCTTATTGTACGGCTTACCGTTAGATCAACGGGTCGAATTTCCCTAACGACCAAATATATGTAAACGTTACGCCTTTGTTtacatattcttttttttttaagtaacagaTGTTTACCGCTGGCCCGACAGGGCGTTCAGCGTCGCCCCGTCCGGATTTGCAAAAAGCGGTTTGCGGAACTTGTGCAGCTTGCAAAGGACACCTAAACGATTCTACAGAGCCAAAACTTCTGCCCTGCCTCCATACAGTCTGCAATACATGTCTTACAAAGATCTGCACAGATGGAAGCTCACAAGACTGCCCTTCATGTGCACAATCCTTTGGTTTGTCTGAAGTCACAGAATGTGCCATTTTTGAAGACTTGTCTGATAACAACAAGGCCCCCAAGTGTGGTGGGTGTGAGGAGAATGAGGTCAGTGGTTGGTGTGTCCAGTGTGAGGAGGCCTTGTGTTTGGACTGCGTGACTGCACATCACAGGGTTAAAGTGACCCGTGACCATGAAGTCATGCCCAAAAAGCCACCCACAGGCTGGATCCAGAGAAGACGCTGTCCCTTACACTCTCAGGAAAGCTTGAGGTTCTTTTGTCTTGTTTGTGAAGAGCTCACCTGTAAAGACTGTCAGCTGATCACTCATAGAGGACACAGTTTTGTGAATCAGGAGGAAGCTGTGGAATCTCAGAAACAGCAAATGAACAGTTTGCTGGACTCCATCAGACGTCAGAAAGGGACGATCAGCCACAGCCTCCTGCTGCTAGAGGCAAGATTACAGGACATAGAGCATGTGAAAATGTTAACGAAGAAGTTATTGATACAGAGCGTCCACAAGATTTATCACAGCATGGTTCTGAAAGCTTCTCAGATCTTAAAGGATATACAGGCAGTGTTTGCAGAGGAGGTGAGAGTTTTGTTGGAGAGGAAGAGCTCTCTGAGCAGGTTGGAAGGCTGTCAAGACTACATAGCAGATTTTATTGACAAGATTCAAAGAACACAGGGCCACTGCCTcttggtttacaaaaaaagaATTGAGACCCAGGTGAAGATGCTTCTGTCCCGGGAAACATGCACCCCTGAGTCCATGATTAAACTTCACATTGAGATTCAGAAAGATCTCTGTCAGCACATCCTGAATTTTGGATTTGTAAGAATTACAAAGAATTTTGTTCCGTTTACCTCAGAGAGGACTCAATACATTCAGACAAATCCTGTGTCTGTGGAAAGCTTAAATCCAAATTCTATGGAAACTGCCACTAATGTTGGTCATGCTATGGCTTCATCAAGTGTTAATGAACAGATTCCAGGTGATCCTGCTACATCTTCTCAAACTGCACCAAATCACCAGATCCTTCAAAGTATACTTCAGCTATCTCGGTCTAACCAGGCCACAACCCAACCACAACCTAACCACGGCACCTTGTTCCAACCCGACCTATCGAATGTTCGCTATTCAGACTCTCAAAGTTCATGTTCTTCCTCACCGCTATCTGTCCAAGCCCAGTCCCATGAAGTCATGTCTGGGCAATCCAAGCATGCTTACAGTCCTTCTGTTCATTCTCAGCACCATCTTCCATCGAGTCAACagactaaaacaaaatgtaacTCCAAGACTGCCAAGCGTGGGAATACTTGGACTTTACACTATTACTCTGACATGCCAAATCAAACAATACCAAGGATCATCCAAACACCTGCACCAACGCATTCAATACCAGCCAGCAAGAAAACACCAGTGCAAACTCATCCAAATCCAACCAACAACCAAATACTTACACCAGTTCATCCGATGTTAGCCCACAACCAAACAACTATTCCAGTTTATCCAATACAAGGCAATAACCAAATACCTATTGCAAGCAACAACCAAACATCTATACCAACTCATCCAATACCAGGCAGCAATCAACCTTTATTACTGCAGCAAATACCAGCCAACACCCAATCAACCCTATTGACCCATGCAGTTCTTGTCAATAACCTAAGTCCTGTAGTACCCTATGGATTAACAGCCAATGACCAAACACTGGTGCAAACCCAACCAATACTAGCAAACAACCAAACATCTGTACCAACCCATGCAATTCCATTTAATAACCAAAGAAAACCGCTACCCCAGCCAATAACCGACAACAACAAATCACTGGTACTAACCCACCCAATACCAAACAACAATCAAACACCTGTTTTAATGCCACCAATACAAGCCAACAACCAAGCAGCTACACTAACCCATTCTGTACAATTCAACAACCAAACACCTGGGCTAACCCACCCAGTTTCAAACATACAGAGTGACGTTCAAACACTGATAGTGGCCCATCCAATTCAAGCTGGTTTCTTGGGGGCAGTACATGGTTTTGCTGCACAACCCAATGTTCCTTTAACTATTCTTTCAACTGTGAATGCACTTCCTTTAAATGAAGTTACTGCAGTATCTAATGTCCACTCTACTGGAACATCCAATGATGTGATGAATCATTGTCCCATCAATTCAGCCTTTAATGTCACCCCAAGTGGTTCTTCACCCCATGCAAACCCATTGTGTTCTGATCCCATTAGTGGAAGCAATAGAACTAACATCCCAGTTAAGGCCTTGGCTGACTCTGCCTGTGATCAGGAAGCAGGAATGAGCAGCACAAGTTTTACTTATGCAGACTATTCAGAGAGCAACTTGCCCACTTCCACCGTGTCTGATCCTAGAGAATCTTCGCCACTTTCTCCAGACCTATGCTTTGCTGTCTTGGACTCTCTTTCTACCACCACAAAGAAATGTGTAAGGCAAGATAAAGCTGGTCAGTCAACCACAGAGTGTGACTCTGGATCAAAACACTGGAGTGCTGACATGCCAACAACTTTTCGTCAGCTTTTAGAAACAACCTGCACCCCTGTCAACTCAATAGACAGTCGGAATGCCACAACTCCAGTGGGTTCGACTCCTTGTGGATCTTCAGAGGACATTACGGGGAAGAGTGTGTCAAATGGAAAGACTATCCAAAGTTGTTTTGATCACAGCGAGGgagaaaagaatgaaaaagaatcTGCAGcAACGCTGAAACGCTTCAAAACTCAATTAAAGGAATTCAGGAGGTCTCTGTGTGTTTCTCTGGTGCGTCTGCCTGTCTCTCTGCCTCCACATGGGCATCCACTCCCTGAGTTTCACCTTACTACAGATTCTTCCACAGACCACATCTTAGTGCAGGAGTCTCAGGGAGGGGAGATTAAGCAGGTGTGGCGATGGCATGATGGTCCAGTAGCATCCAGAGCCTCCTCCTGCTCTACATCACAGATGAGTGACATCGACAGCTCTCCGGCGTCTGATGTACAGTTCTGTGTCGTGTGCCAGTCTGCAGGAGCTTCACTTCTCTGTGCAAAATGTGGATCCGCTTTTCACTCTGACTGTCACATCCCACCAATCTTCACTAAACCTCGTGAGGATTGGGTGTGTTTGCTCTGTCAGGATGTCAGCGAGACTCTTATGATTGACTCTGGTGAGGAGATGAAGACGACCGGTCTGAGTCTTCAAGATCAAAGAAGGTGTGAGAAGCTTCTCCTGGGCCTCCAGTGTGATGAGAACATGGGCCTGCTCTACAGCGTCACCAAAAATCACTCAAAAACAGCTGAATTTGATATAATACTCGGCCGGCTGCAGGGGAACAGGAAACCACCTTACCGGACAGCTGCTGAACTAGTGTCGGATGTTTGGACTCTTTTTGACATCTTATTTATTCGTTCTGAGAACAAAAGTCTGGTTGTCAGTCTTCAGCAATCTTTTCAGCAATGCCTGAATCAATCTTTTGGCACGAGTCTTCACGCTTCTCTCCTGCAGCACTCCAGCAGCACAGGAGCAGGAGAAACATCACAAACAGACCCTCTGAAACAGAAACACAGAAACACTTTGAAACGCATGAGAGAATTTTTTACTACAAAATCTACTATCGCTGTAAAGAAATCCTGCAATGACAAAGGGAAGAAGGACACTACAGCTGCTAAACATTGAAGGACATCATTCATTTTGAATTGACAGAAATACTGTTTTGAAGAGAAAATGACCACTTTGtatttattgctgttgtttaTTTAGCTTCGCCTTTACTTAAATGTGAATTAAAcagatgttttatttca

Function

symbol description
trim33l Predicted to enable several functions, including promoter-specific chromatin binding activity; transcription corepressor activity; and ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:1990841 promoter-specific chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5695 Predicted to enable several functions, including promoter-specific chromatin binding activity; transcription corepressor activity; and ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000086126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019897 True 4150 mRNA 0.44 17 28764017 28790417

Neighbor

gene id symbol gene type direction distance location
XLOC_009997 s100v1 coding upstream 4011 28754403 ~ 28760006 (+)
XLOC_009995 dcst2 coding upstream 9946 28727383 ~ 28754071 (+)
XLOC_009996 si:dkey-24i24.3 coding upstream 26843 28728347 ~ 28737174 (+)
XLOC_009994 NA coding upstream 96684 28660395 ~ 28667333 (+)
XLOC_009993 crot coding upstream 136449 28601974 ~ 28627568 (+)
XLOC_009999 zgc:171704 coding downstream 1741 28792158 ~ 28796865 (+)
XLOC_010000 chtopb coding downstream 90818 28881235 ~ 28887159 (+)
XLOC_010001 si:dkey-239n17.6 coding downstream 113357 28903774 ~ 28991376 (+)
XLOC_010002 gon4l coding downstream 204292 28994709 ~ 29024769 (+)
XLOC_010003 gpatch4 coding downstream 234875 29025292 ~ 29030674 (+)
XLOC_009989 CR936250.1 non-coding upstream 375854 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 392687 28270015 ~ 28371330 (+)
XLOC_009986 NA non-coding upstream 713989 28049554 ~ 28050028 (+)
XLOC_009984 NA non-coding upstream 890650 27839927 ~ 27873367 (+)
XLOC_010005 NA non-coding downstream 420945 29211362 ~ 29230847 (+)
XLOC_010006 NA non-coding downstream 455463 29245880 ~ 29250848 (+)
XLOC_010014 NA non-coding downstream 800702 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 931210 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 1113227 29903644 ~ 29908970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07545610_07559939 NA coding CI01000027 null 7545610 ~ 7560158 (+)