XLOC_010001 (si:dkey-239n17.6)


Basic Information

Item Value
gene id XLOC_010001
gene name si:dkey-239n17.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28903774 ~ 28991376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019901
GGAATGCAGCTCGACACAGAGATGAGGTGGAGCTTTCTGTGAGGTAATGTGATTTGAGAAATTCACGGCTGCTCTTGGCACTCTGAATGACACACAGTCAGCCTGCAGGGATGAGTTTCACAGAGGCAGAGATGTGTTTTGTGCTGTGCTGAGTGGACTTGTCACAGGATTGTACCAACTCATGTTGAGCAGACCTGAAGACATCATGTATAAGAGtgttCCTGATCAGTTGGAAGTGTGAGCTGCAGTGATATGAGTCTGTTGCTCTGCTTCAGTGAAAGCAGATTCTTTCTGCTGCCTTTGCTCTTGCTGTGTTGTGGGACTCTTTCTACCTGGACCAAGATCAGCAAACACCAAGGTTCCCACAAAGGGGCGCACAACCACTCCAATGACATTGTGCTGGCTGTCATACTCCCTCAACACAATACATCCTATCCCTGGGCATGGCCCCGTGTGGGCCCAGCACTGGACCGTGCCATTGCTCGTGTCAATGCCAACCCCAATCTGCTGCCCCGGCACCGTGTCCGCCATGTTTTTGCAAACAGCGAGGACAGGGATGGTATCTGCTCCGAGTCCATGGCCCCCCTCATGGCTGTAGATCTGAAGTTTGAACACAACCCATGGGCCTTTATAGGGCCTGGCTGTGATTACACCTCATCCCCTGTTGGGCTGTTCACTGCTCATTGGGGCCTCCCCATGATCACAGCTGGGGCCCCTGCTGTAGCTTTCTTGCAAATGGAGATTTACACCTCCATCACTAACAC
>TCONS_00019902
ATGAGTCTGTTGCTCTGCTTCAGTGAAAGCAGATTCTTTCTGCTGCCTTTGCTCTTGCTGTGTTGTGGGACTCTTTCTACCTGGACCAAGATCAGCAAACACCAAGGTTCCCACAAAGGGGCGCACAACCACTCCAATGACATTGTGCTGGCTGTCATACTCCCTCAACACAATACATCCTATCCCTGGGCATGGCCCCGTGTGGGCCCAGCACTGGACCGTGCCATTGCTCGTGTCAATGCCAACCCCAATCTGCTGCCCCGGCACCGTGTCCGCCATGTTTTTGCAAACAGCGAGGACAGGGATGGTATCTGCTCCGAGTCCATGGCCCCCCTCATGGCTGTAGATCTGAAGTTTGAACACAACCCATGGGCCTTTATAGGGCCTGGCTGTGATTACACCTCATCCCCTGTTGGGCTGTTCACTGCTCATTGGGGCCTCCCCATGATCACAGCTGGGGCCCCTGCTGTAGCTTTCTTGCAAATGGAGATTTACACCTCCATCACTAACACAGGCCCTACGCACAAGAAGCTGGGCGAGTACGCCCTTCACCTCTACAGACATTTCGGTTGGAACCAACACTCCCTGTTGATGTTCAGTGACACCAAAATGGGAGAACGAGCCTGCTATTTTGCCCTGGAGGGTCTTTACACAGAAATGCATGAGGAAAATATCACAACCATGGATCTTGTGTTCGAGGAGAACAAAGGACCTGTTAACTATTCAGAGCTCCTGCACAAAATCCAGGGTGATGGACGAGTGGTGTTTGTGTGCTGCTCACCGGATGTTTTCCGCCAGTTGATTGTGCACTTCCACAAGGCTGGTCTCCCTAAGGAAGAATATGTCTTCTTCTACATTGACATTTTTGGACACAGTTTCAGATCAAGGCCTTCTCAGCCGTGGGCCAGAGGAGACTCGGATGATGTCTTTGCGAAGGAGGCTTTTCAGAGTGTGAAGATTCTGACATACCTTGAGCCACAGAATCAGGAATACAAAGATTTTGTAACTGACCTGAAATCGGATGCCAAACGGATGTTCAATTTCACAGTGGATGACTCTTTAATGAACATCATCTCTGGGGGTTTCTATGATGGTCTGATGCTGTACTGCCATGCTTTAAATGAGAGCCTTTCAGACAGCCATGAACGACCTTCAGGAGAGTCTGTCAGCAAACGAATGTGGAACCGGACCTATTATGGAGTCACAGGTCTAGTGCAGATTGATGAGAATGGAGACAGAGAGACTGATTTCGCCCTGTGGGACATGGCTGACATCAACACTGGCGACTTTCAGATTGTGGCAGTGTATAATGGCACCCAAAAGGAGATGAATATTCTTCCTGGGATGGCTATCCAGTGGCCAGGTGGTAAAGTCCCTATGGATGTGCCCACCTGCGGATTTAAGAACGAAAACCCTGCCTGTCGAGCAAGAACCATCGCAATGCACCAGATGATTTCCATTGTGCTTttcctcatcctcatcatcatcttcactgtGACTGTTTTTATATACAGAAAGCTGAAGCTGGAGAAGGAGTTGGTTGCTCAGTTATGGAGGATTTCCTGGGATGACATTCAGATGAGCCATCTGGAAAAGGCCCTGAGAAGCACCGGCAGCAAACTCACACTCTCACTAAGAGGTTCTAACTATGGATCGCTGCTGACGACTGATGGAAATTTTCAGGTGTTTGCTAAGACTGGCTACTTTAAGGGAAATATTGTGGCTATTAAATACATCAACAGAAGGCGCGTCGAGTTAACGAGGAAAGTGTTGTTTGAACTGAAGCATATGAGGGATGTGCAGAATGAGCATTTGACCCGTTTTATCGGCGCCTGCATCGACCCACCCAATATCTGCATTGTCACTGAATACTGCCCTCGAGGCAGCCTGCAGAATATTTTGGAGAACGACAGCATTACACTAGATTGGATGTTCAAATACTCATTAATCAGCGACATAGTAAAGGGCATGGCTTTCCTTCATAACAGTGTGATTGTATCCCATGGCAACCTGAAGTCTTCCAACTGTGTGGTTGACAATCGTTTTGTGCTAAAGATCACTGACTACGGGCTGTCCAGCATCAGGACGGAGTCGGACACGGAGGACGCCCACTCTTATTATGCACGTAAGCTGTGGTTGGCTCCAGAGTTGTCGAGAATGGAGTGCTTTCCTCCAGGAGGCACTCAAAAGGGGGATGTCTACAGTTTTGGCATCATACTTCAGGAAGTGGCTTTGCGCAGAGGAGTCTTTTACCTGGAGGGAGACTTGCTAAGCCCTAAAGAGATTGTGGATCGGGTGGCTCTGGGTGAATGGCCGTATCTCCGTCCATCACTGAACCCTCAGGCACACAGTGAGGAGCTCGGTCAGCTGATGCAGCGCTGCTGGGCTGAAGAACCATCAGACAGACCTGAGTTCAGCCATATTAGTGTGTTACTCCGCAAACAGAACAGGTCTGTCCCTCATTACTCCATAGTTCTTTCTCAGTATGCTAATAATCTGGAGGAGCTGGTAGAGGAGAGAACTCAAGCATACCTAGAAGAGAAACGCAAGGCAGAAGCTTTACTGTACCAGATCCTCCCTCAttcagTAGCTGAACAGCTGAAGAGAGGTGAGACGGTGCAGGCTGAAGCTTTTGACTCTGTCACCATCTATTTCAGTGATATTGTAGGCTTCACATCACTGTCAGCGGAGAGCACACCTTTGCAGgTCGTCACCCTCCTCAATGACCTCTACACTTGCTTTGATGCCATCATAGACAATTTCGACGTTTACAAGGTGGAGACAATAGGCGATGCTTACATGGTAGTTTCAGGACTGCCGGTACGAAACGGCAAACTGCATGGTCGTGAGATTGCACGGATGTCCCTCGCTCTGTTGGAGGCTGTCAAAACATTTAAGATTCGCCACCGACCCGATGAGCAACTCAAATTACGAATCGGCATTCACAGTGGCCCTGTATGTGCAGGTGTAGTTGGGCTGAAGATGCCTCGGTATTGTCTTTTCGGAGATACTGTAAACACATCTTCTCGTATGGAGTCGAATGGAGAACCTCTGAAGATTCATGTGTCATCAGCCACTCGAGCTGTGCTGCAGGAGTTCAACTGCTTTCAGCTGGAGCTCAGGGGAGATGTGGAGATGAAGGGGAAAGGCAAGATGAGGACCTACTGGCTTCTGGGAGAAGTGAAGGCCGGTGATTGA
>TCONS_00019903
TGGTGTTTGTGTGCTGCTCACCGGATGTTTTCCGCCAGTTGATTGTGCACTTCCACAAGGCTGGTCTCCCTAAGGAAGAATATGTCTTCTTCTACATTGACATTTTTGGACACAGTTTCAGATCAAGGCCTTCTCAGCCGTGGGCCAGAGGAGACTCGGATGATGTCTTTGCGAAGGAGGCTTTTCAGAGTGTGAAGATTCTGACATACCTTGAGCCACAGAATCAGGAATACAAAGATTTTGTAACTGACCTGAAATCGGATGCCAAACGGATGTTCAATTTCACAGTGGATGACTCTTTAATGAACATCATCTCTGGGGGTTTCTATGATGGTCTGATGCTGTACTGCCATGCTTTAAATGAGAGCCTTTCAGACAGCCATGAACGACCTTCAGGAGAGTCTGTCAGCAAACGAATGTGGAACCGGACCTATTATGGAGTCACAGGTCTAGTGCAGATTGATGAGAATGGAGACAGAGAGACTGATTTCGCCCTGTGGGACATGGCTGACATCAACACTGGCGACTTTCAGATTGTGGCAGTGTATAATGGCACCCAAAAGGAGATGAATATTCTTCCTGGGATGGCTATCCAGTGGCCAGGTGGTAAAGTCCCTATGGATGTGCCCACCTGCGGATTTAAGAACGAAAACCCTGCCTGTCGAGCAAGAACCATCGCAATGCACCAGATGATTTCCATTGTGCTTttcctcatcctcatcatcatcttcactgtGACTGTTTTTATATACAGAAAGCTGAAGCTGGAGAAGGAGTTGGTTGCTCAGTTATGGAGGATTTCCTGGGATGACATTCAGATGAGCCATCTGGAAAAGGCCCTGAGAAGCACCGGCAGCAAACTCACACTCTCACTAAGAGGTTCTAACTATGGATCGCTGCTGACGACTGATGGAAATTTTCAGGTGTTTGCTAAGACTGGCTACTTTAAGGGAAATATTGTGGCTATTAAATACATCAACAGAAGGCGCGTCGAGTTAACGAGGAAAGTGTTGTTTGAACTGAAGCATATGAGGGATGTGCAGAATGAGCATTTGACCCGTTTTATCGGCGCCTGCATCGACCCACCCAATATCTGCATTGTCACTGAATACTGCCCTCGAGGCAGCCTGCAGAATATTTTGGAGAACGACAGCATTACACTAGATTGGATGTTCAAATACTCATTAATCAGCGACATAGTAAAGGGCATGGCTTTCCTTCATAACAGTGTGATTGTATCCCATGGCAACCTGAAGTCTTCCAACTGTGTGGTTGACAATCGTTTTGTGCTAAAGATCACTGACTACGGGCTGTCCAGCATCAGGACGGAGTCGGACACGGAGGACGCCCACTCTTATTATGCACGTAAGCTGTGGTTGGCTCCAGAGTTGTCGAGAATGGAGTGCTTTCCTCCAGGAGGCACTCAAAAGGGGGATGTCTACAGTTTTGGCATCATACTTCAGGAAGTGGCTTTGCGCAGAGGAGTCTTTTACCTGGAGGGAGACTTGCTAAGCCCTAAAGAGATTGTGGATCGGGTGGCTCTGGGTGAATGGCCGTATCTCCGTCCATCACTGAACCCTCAGGCACACAGTGAGGAGCTCGGTCAGCTGATGCAGCGCTGCTGGGCTGAAGAACCATCAGACAGACCTGAGTTCAGCCATATTAGTGTGTTACTCCGCAAACAGAACAGGGAGCACAGGAGTAATATCCTGGATAATCTTTTGTCTCGTATGGAGCAGTATGCTAATAATCTGGAGGAGCTGGTAGAGGAGAGAACTCAAGCATACCTAGAAGAGAAACGCAAGGCAGAAGCTTTACTGTACCAGATCCTCCCTCAttcagTAGCTGAACAGCTGAAGAGAGGTGAGACGGTGCAGGCTGAAGCTTTTGACTCTGTCACCATCTATTTCAGTGATATTGTAGGCTTCACATCACTGTCAGCGGAGAGCACACCTTTGCAGgTCGTCACCCTCCTCAATGACCTCTACACTTGCTTTGATGCCATCATAGACAATTTCGACGTTTACAAGGTGGAGACAATAGGCGATGCTTACATGGTAGTTTCAGGACTGCCGGTACGAAACGGCAAACTGCATGGTCGTGAGATTGCACGGATGTCCCTCGCTCTGTTGGAGGCTGTCAAAACATTTAAGATTCGCCACCGACCCGATGAGCAACTCAAATTACGAATCGGCATTCACAGTGGCCCTGTATGTGCAGGTGTAGTTGGGCTGAAGATGCCTCGGTATTGTCTTTTCGGAGATACTGTAAACACATCTTCTCGTATGGAGTCGAATGGAGAACCTCTGAAGATTCATGTGTCATCAGCCACTCGAGCTGTGCTGCAGGAGTTCAACTGCTTTCAGCTGGAGCTCAGGGGAGATGTGGAGATGAAGGGGAAAGGCAAGATGAGGACCTACTGGCTTCTGGGAGAAGTGAAGGCCGGTGATTGAGAGCGAAGGGCTCCGCTGCTCAACTGACCCAAGTAGCCAAACACATCCACAGGGAAACCAAGCCAAGACTGTTTTGTTGGCTAAATGCACACGCATGTAATCTTGTACAGCACTGGATGATGTCAGATCTTGTATATATGTAATTTAAAGATGTTTCTTTTGTAAGACCACGAGCTTCGGCAATCGGCTATCACAGAGTGATAGCCGATTGAGTGAGTGTGATTGAACATCGTCCCCTGCTGGAGAAGTAGCGACACTGCTGGCTTGAAATatatgtatacactgtaaaaaaaattgacaaaaagtcatgaaagcaaatgctttttttatgttactgtaactaattttaatcagttaatataatttgttttagttatgCAAAGTTTGCATGTaatttgagatgactagaaacattcatttgattccaaaacaaatttaggaaacattttattacagtaaaggctaaataaatacaataatttccAGGGTGTGTGTGAAAGAAGACGGTTAAATATTAAAGATCAAGTAATTACATTTTAGTTCTCCATTATATTACTTGgcctttattatttaaaagttttaaagacCAGCATCCATTACGTATCATTTACTATATTTCAGTAAAGTAACATTTCTAGATTTATGTTttctaaatcattttattttacccATTCAGACTTCTGCACGTCATGTGTACATTCCTTCTCAAGCCACTTAGTTTGTCTCCTGGTTGGTCCTGCTGAATGAGAGTGGCTTCAGTTTTCATAAGgatgtaatgtaaaaataattggTGTGATCTATACAGCATTTTTGTGAGCCATACACAACTAGagttcataaaataaaatcagcctGCTTTCCTAA

Function

symbol description
si:dkey-239n17.6 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100805-4 Predicted to enable guanylate cyclase activity; natriuretic peptide receptor activity; and peptide hormone binding activity. Acts upstream of or within olfactory bulb axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; fin; integument; muscle; and renal system. Human ortholog(s) of this gene implicated in myocardial infarction. Orthologous to human NPR1 (natriuretic peptide receptor 1).

Ensembl:

ensembl_id ENSDARG00000018750 ENSDARG00000095848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019901 False 764 mRNA 0.52 2 28903774 28908989
TCONS_00019902 False 3198 mRNA 0.49 21 28908478 28990512
TCONS_00019903 True 3317 mRNA 0.44 20 28932038 28991376

Neighbor

gene id symbol gene type direction distance location
XLOC_010000 chtopb coding upstream 16615 28881235 ~ 28887159 (+)
XLOC_009999 zgc:171704 coding upstream 106909 28792158 ~ 28796865 (+)
XLOC_009998 trim33l coding upstream 113357 28764017 ~ 28790417 (+)
XLOC_009997 s100v1 coding upstream 143768 28754403 ~ 28760006 (+)
XLOC_009995 dcst2 coding upstream 149703 28727383 ~ 28754071 (+)
XLOC_010002 gon4l coding downstream 3333 28994709 ~ 29024769 (+)
XLOC_010003 gpatch4 coding downstream 33916 29025292 ~ 29030674 (+)
XLOC_010004 nes coding downstream 52437 29043813 ~ 29057849 (+)
XLOC_010005 NA coding downstream 219986 29211362 ~ 29230847 (+)
XLOC_010006 NA coding downstream 254504 29245880 ~ 29250848 (+)
XLOC_009994 NA non-coding upstream 236441 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 515611 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 532444 28270015 ~ 28371330 (+)
XLOC_009986 NA non-coding upstream 853746 28049554 ~ 28050028 (+)
XLOC_009984 NA non-coding upstream 1030407 27839927 ~ 27873367 (+)
XLOC_010014 NA non-coding downstream 599743 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 730251 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 912268 29903644 ~ 29908970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07634015_07663101 NPR1B, NPR1 coding CI01000027 null 7633964 ~ 7663410 (+)