Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_010007 |
| gene name | hapln2 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 29303971 ~ 29308947 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| hapln2 | Enables identical protein binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in otic placode; otic vesicle; and pharyngeal arch. Orthologous to human HAPLN2 (hyaluronan and proteoglycan link protein 2). |
| id | name | namespace |
|---|---|---|
| GO:0001501 | skeletal system development | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005540 | hyaluronic acid binding | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| id | description |
|---|---|
| ko00536 | Glycosaminoglycan binding proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-8089 | Enables identical protein binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in otic placode; otic vesicle; and pharyngeal arch. Orthologous to human HAPLN2 (hyaluronan and proteoglycan link protein 2). |
| ensembl_id | ENSDARG00000003903 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00019913 | True | 1098 | mRNA | 0.49 | 6 | 29303971 | 29308947 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_010006 | NA | coding | upstream | 53123 | 29245880 ~ 29250848 (+) |
| XLOC_010005 | NA | coding | upstream | 73124 | 29211362 ~ 29230847 (+) |
| XLOC_010004 | nes | coding | upstream | 246122 | 29043813 ~ 29057849 (+) |
| XLOC_010003 | gpatch4 | coding | upstream | 273297 | 29025292 ~ 29030674 (+) |
| XLOC_010002 | gon4l | coding | upstream | 279202 | 28994709 ~ 29024769 (+) |
| XLOC_010008 | rrnad1 | coding | downstream | 67804 | 29376751 ~ 29384935 (+) |
| XLOC_010009 | ctsk | coding | downstream | 183802 | 29492749 ~ 29502787 (+) |
| XLOC_010010 | ctss2.1 | coding | downstream | 200186 | 29509133 ~ 29513434 (+) |
| XLOC_010011 | ctss2.2 | coding | downstream | 205526 | 29514473 ~ 29519977 (+) |
| XLOC_010012 | ensab | coding | downstream | 246854 | 29555801 ~ 29577708 (+) |
| XLOC_009994 | NA | non-coding | upstream | 636638 | 28660395 ~ 28667333 (+) |
| XLOC_009989 | CR936250.1 | non-coding | upstream | 915808 | 28388046 ~ 28388163 (+) |
| XLOC_009987 | NA | non-coding | upstream | 932641 | 28270015 ~ 28371330 (+) |
| XLOC_010014 | NA | non-coding | downstream | 282172 | 29591119 ~ 29600668 (+) |
| XLOC_010018 | NA | non-coding | downstream | 412680 | 29721627 ~ 29813252 (+) |
| XLOC_010019 | AL928927.1 | non-coding | downstream | 594697 | 29903644 ~ 29908970 (+) |
| XLOC_010021 | FP103008.1 | non-coding | downstream | 771596 | 30080543 ~ 30080661 (+) |
| XLOC_010024 | NA | non-coding | downstream | 1020916 | 30329863 ~ 30330881 (+) |
