XLOC_001003 (fbxl18)


Basic Information

Item Value
gene id XLOC_001003
gene name fbxl18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8638162 ~ 8646941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001591
GTGCTACACTATATACTGAACATACACCATTGATATACACATATTACCGCTATGCGTGTGCCAGATTTTACAGTATCAACAACTGTTATACGTTTATTGAGATGGCAAGAATTAGTTTTTCTATATTACTGAAGTACACATCCCAACACCTTTCCCAAAAGCGCCATGAATAATCAAATTGAAACGGCTCAGTGCTTCTCAGACAACATTTCTcaggtctctgtcaccatctctGACTTCTCAGATGAGATTTTACTGAATATCCTGCGATTCATTCCCAGCCATGACCTGATACTCAACGTAAGTCGAGTGTGCAGAAAACTCCGAACTCTCTGTCTGGACAAGAGCTTGAGAGTCCATGTACACCTGCATAAAGAATACACGGCAAACGACGATGCTGTGAAGCAGCTCTTAAAAGTAATTTCAGCTGACATCCAGACGTTAAACCTCAATGGCTGCTACTGGCTGGCCGGCTCTACAGTGGATCAGGTCACCCGCTGTAAGTCTTTGGTCAGTTTGGACCTTTCCGGCTGCAGATTGACATCAGTTCGCCTCTCGCATCTGCTGAGCTCTCTTAGCTCTCTGAAGTCTCTGGCACTGGATGTGGGGCCGGGGTTTGATCTCCACCAGCTGAGCGCAGAGGGTAAGTCTGCTCTGGCTCGTCTGCAGGAGCTCAAGCAGACGCTGTTGACTCCTTCCTATGGCGTGGTTCCCTGCTGCAGTGCCCTGCGGCGCCTTCACCTCTATCTAGAGGCCAGCGAGGTCTGGAGGGAGGCCGGCGGCTGTGCGCAGCTGATGGTGGGCCAGAGCAGCGTGCCGCACTATCAGAATCTGCGCTGGTTCTCCGCTCGCCTCGCACCCGGTGAAGTCAACCGTACTCTGTTGGCGCTTTACTTAGCTGTTTTCAGTATGAGAGTTCCTGAAGGCCTTGCAGGATTGGTACTCTCTGTGCCAGGCCCTGCACCGCCACGACCAGTCGCAATGACGGCGCTAATGGAAAGCATGGCGTCAACTGTGGGAAATACTGTTAGTGCTTTGCAGCTTCCACGTACATGGTTGGACGGTGCTATACTTGGGCGGGTGTTAGCGCATGGATGTCCTGCATACCTGAATGTCTCCCGGTGTTCATCTCCAGGGTTCAACCCTTTACATGTGCTACTCAGTGCGGGACGTGACCTCACACCCCTGCGGAGCCTCAACCTGCGGGGATGCGGTCGAGGCCCGCTCTCTGAGAGCTGTGGGAAGGGCGATGAGGAGATGGACACGGACAGCGTCAAAGCACTTGCTGAATGTTGCCCACATCTTAATCACCTTAATTTATCTGCAACGCACTACCATCATAATCTCTCCACGGGGCAGGATGGACACTTGTGTGGTACTTTGGGACGCCTCACTGGCTTGTGCTCGCTTGCACTTCCGGTGTGTGCATTAGCACAATCTCCTCCAACTCAAATAAACAATCAAGACTCCAACACAGACCTCGCCTCAAGATCACTGCTGCTCGGGCTTAAAAAGACCACCCGCATTGGTGTGCCCACATATCGACCCACATCTGAAATCGCAGTGGGTCAGGGGGAAGAGCGGACAGACCGGGGCTTGTGCATTCAACCACTGCTTCAAGGTTGCCCGTATCTAGTAGAGCTGGAGCTGATTGGTGCAGGCTTTTCCTCAGCCATGCCCCGGAACGAGCCGGCCATTCGCAAGGACCCCGCTGCATGTTCCTGGTCCTACAGCGTTGGAGATGGGGAGTTAGCTGCTTTAGGTGGGATGAAATTTTTGCGCAAGCTCACCCTCGCGCATTTACCAGGAGTTCTGAAGGGGACGGGACTCATCGAGCTGCTTCAGGGGTGCAAGGACCTGCATTCCTTATCGCTGGCAAATCTAGGATCTTTAAAGACCATGAACTACACGCAGGCCCTGCTGGAGGCTCTTTCCTACTGCACACAAGTCAGGGACTTAAGGCTGGAGCAGCCCTACTTTAATGCAAACGCAGCGTTTTTCGAAGCGCTCAGTCAGTGTGGTCAGCTGCGGCGTCTGTGTTTAGTTTCTCGACACGGCACTTTCCAACCCGCCGCTGTGACGGCCTTCATGCAGAGCTGCTCTGTCATCATGTGCCACATGTTCATGGGAGGAACGCTGGTGGCCTGTAAAACGCTGCAGAAAACCCTTCTGGACAGTTTTTCAGTGTCTCGTCCAGCTCTTAGTGTGGTGATTTACCCTTTACTGCATGAAGACCTGGCCCATGTGATCAGAGGTATGCCACTGTGCCACCTGGAcgaaatgacactttttaaaagtCGTGTTGCTGAAGAGCCCATGAGTCGGTGACTGTGGAAATATTGACGAAAAAAGAGAATCATTCTTTGGTGGATTAACCTGGGTCATACATCTGTGCTGTTTTTGAGAGTGTATTCATAATTGTGCATTATGGAAAGTCTGCTTTCTGATAATGAAATATTAGCAAACCGGTTGAAGGATAattggaaaacttttttttttttacttgagagATCATATGGACTATCATAGCTTTCCTAATAAGCTCATTGTTTACCAGTAAAGAGGCAGTATGAACAAGCTCTATGTCAGGTTATAATGTCATCTTTGGATATGTGCCAAAATAAAA

Function

symbol description
fbxl18 Acts upstream of or within sclerotome development. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL18 (F-box and leucine rich repeat protein 18).

GO:

id name namespace
GO:0061056 sclerotome development biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050913-65 Acts upstream of or within sclerotome development. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL18 (F-box and leucine rich repeat protein 18).

Ensembl:

ensembl_id ENSDARG00000007443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001591 True 2626 mRNA 0.50 5 8638162 8646941

Neighbor

gene id symbol gene type direction distance location
XLOC_001002 NA coding downstream 12896 8612575 ~ 8625266 (-)
XLOC_001001 NA coding downstream 50803 8579155 ~ 8587359 (-)
XLOC_001000 ptcd1 coding downstream 71595 8555323 ~ 8566567 (-)
XLOC_000999 zgc:112980 coding downstream 84864 8539671 ~ 8553298 (-)
XLOC_000998 NA coding downstream 128096 8504977 ~ 8510066 (-)
XLOC_001004 actb1 coding upstream 2158 8649099 ~ 8653385 (-)
XLOC_001005 abcg2b coding upstream 26120 8673061 ~ 8691969 (-)
XLOC_001006 grin2ab coding upstream 116488 8763429 ~ 8928841 (-)
XLOC_001007 socs1b coding upstream 315683 8962624 ~ 8966046 (-)
XLOC_001008 NA coding upstream 327559 8974500 ~ 8977963 (-)
XLOC_000996 NA non-coding downstream 432934 8202390 ~ 8205228 (-)
XLOC_000985 CR855320.6 non-coding downstream 717956 7920119 ~ 7920206 (-)
XLOC_001009 NA non-coding upstream 331964 8978905 ~ 8980671 (-)
XLOC_001010 NA non-coding upstream 434901 9081842 ~ 9082772 (-)
XLOC_001015 NA non-coding upstream 491697 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 non-coding upstream 510369 9157310 ~ 9162637 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00466979_00471945 FBXL18 coding CI01000300 null 466979 ~ 471945 (-)