XLOC_010031


Basic Information

Item Value
gene id XLOC_010031
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31121756 ~ 31135431 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021725
GCCAGTCTGAAGTGTTTGGTTCAGTGATTCAACAGATTTATAGGATGTATGTTTTGTCCATTTTTTGTTTGAGTCTATCATCTGTTTACTTCATGTACTGATATCTCTGTCCTGCTCTGCCTTTTTTTTTCCCACACCAGTGACCAGACTCCAACGGAGCGAAGCACAGACTCCACTCATCTCTCACTGGGACAAATAAACTACAGAGAGAAACCCACAAAGCACTGCAGAAAAACACCCAAGAGAAAACAGCCTTCACGTTCCAGCGCCCGCAGCACTAAAGGTCTTTGTTTTACAGCGATTTCTCAGTGCTCGGCTCTCGAGGGAGAGGAATTGATCAGCCTCTCTGCACGGAGATATTGTCGAACTGACAGGAAGGCCTGTCTCACAGCTGGCCCGACAAAAGCAGAGACAGTGTGTGAGAGAACACAGCTGTGTGCAGAGATGCATTCCTGCCTAATTAAAACAGG
>TCONS_00021726
GCCAGTCTGAAGTGTTTGGTTCAGTGATTCAACAGATTTATAGGATGTATGTTTTGTCCATTTTTTGTTTGAGTCTATCATCTGTTTACTTCATGTACTGATATCTCTGTCCTGCTCTGCCTTTTTTTTTCCCACACCAGTGACCAGACTCCAACGGAGCGAAGCACAGACTCCACTCATCTCTCACTGGGACAAATAAACTACAGAGAGAAACCCACAAAGCACTGCAGAAAAACACCCAAGAGAAAACAGCCTTCACGTTCCAGCGCCCGCAGCACTAAAGGTCAAGAGAGCTGGCTGTCATCCTTCCAAGAGGAAGCGTAAGATGCAAAGTAACTATAGAATGAGCCGTGAAAACCCTTCAAAGACGCACTCAACAGCAGGAGGCTAATTTTGGTAACAGTTATAATACAGGCTCATTACCTTCCCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021725 False 470 lncRNA 0.47 2 31121756 31128084
TCONS_00021726 True 431 lncRNA 0.45 2 31121756 31135431

Neighbor

gene id symbol gene type direction distance location
XLOC_010030 NA coding upstream 27176 31090998 ~ 31094580 (+)
XLOC_010028 gstk2 coding upstream 115067 30933044 ~ 31006689 (+)
XLOC_010029 BX510336.1 coding upstream 150599 30970501 ~ 30971157 (+)
XLOC_010027 fam210ab coding upstream 509026 30604387 ~ 30612730 (+)
XLOC_010026 mc2r coding upstream 544620 30575901 ~ 30577136 (+)
XLOC_010032 scxb coding downstream 261216 31396647 ~ 31402154 (+)
XLOC_010033 ndrg1b coding downstream 376308 31511739 ~ 31517227 (+)
XLOC_010034 SLA coding downstream 407214 31542645 ~ 31547800 (+)
XLOC_010035 CR855311.5 coding downstream 499039 31634470 ~ 31634595 (+)
XLOC_010036 wnt4b coding downstream 666772 31802203 ~ 31813018 (+)
XLOC_010024 NA non-coding upstream 790875 30329863 ~ 30330881 (+)
XLOC_010021 FP103008.1 non-coding upstream 1041095 30080543 ~ 30080661 (+)
XLOC_010019 AL928927.1 non-coding upstream 1212786 29903644 ~ 29908970 (+)
XLOC_010041 NA non-coding downstream 825477 31960908 ~ 31985059 (+)
XLOC_010047 NA non-coding downstream 957281 32092712 ~ 32095684 (+)
XLOC_010052 NA non-coding downstream 1143568 32278999 ~ 32365571 (+)
XLOC_010053 CR533571.1 non-coding downstream 1262076 32397507 ~ 32509458 (+)

Expression


Co-expression Network