XLOC_010036 (wnt4b)


Basic Information

Item Value
gene id XLOC_010036
gene name wnt4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31802203 ~ 31813018 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019956
ttttttttttcaaaaccttTGGATTTGCTCATTTGGTGGACAAACTGGATTATTGAAATGGCAACTTTTTAGAACTTATACTGCTCTGAAAGGGAAATAAATGCTTTTTAGGATTTTTGATGAACTTTTTAGTGAGGTAATTCTTTAAAAATGGAACATCTTCTCATTTTATCTGTATAAGTAATCATTTTGTCACCCCGAGTCATAGACTCAAGCAAAACGAGATatagattttgttttgttatggaTGAGCATGCCATAAGATGAATATCTCTCTGTGTGTGACAATAAGATTACAGCTTAGAGGCATTTTATCTTCAAAACACAAGTGGAAGTAATTAGAATAGATCGAGCTGATGATCAATTGGAATCATTTCTGAGACTCGGTTTGACATCGACAGGACTTTTTTGGAGCCTTTCGGACCTCAAACTGATATGAGGGGAACATCCCCAACTACACAGACACTACTGTAAGAGAGAAAACAGTATAGAGTTGAAAAGACAGACCGGCAGACAGACAGGCAATCTGATGCCAACAGTCTCCTCTGTGACTCTCACGGGACGACTCCTCCTGCTGTTGCTATGGGCAGCCCACCTCGCCATGGCAACCAACTGGCTTTCTCTGGCACGTCTGTCCCGCTCACGTCCCGTGTCTGGTGCAGAGCCATGTGGACGTCTGAGGGGTTTGTCTCCAGGCCAGGTCGGGGTGTGTCGGGCGCGGGGGGAGGTCATGGAGTCCGTGCGAAAGGCTTCAGAGATGGTCATCGAGGAGTGCCAACATCAGTTCCGAAACCGGCGCTGGAACTGCTCCACCACACCTCGGGGGATCAACGTGTTTGGGCGAGTCATGAACCAAGGAACGCGTGAAGCAGCTTTTGTTCACGCTCTCTCATCGGCAGCGGTGGCAGTGGCAGTGACCCGGGGCTGCAGCAGGGGTGAACTGGAGAGGTGTGGCTGTGACCGAAAGGTCAGGGGGGTCAGTCCTGAAGGTTTCCAGTGGTCAGGCTGCTCTGATAATCTGTCCTACGGCGTTGCATTCTCGCAAACCTTCGTGGACGAGCCGGAAAGAGCGAAAGGGATGTCTTCAGGACGGCCACTAATGAACATTCACAATAACGAAGCAGGACGGAAGGCCATCCTTCATAACATGCAGGTGGAGTGCAAGTGTCATGGTGTTTCGGGATCCTGCGAGCTTAGAACATGCTGGAAGGTCATGCCTCCATTCCGGCGGGTCGGTGCAGTGCTGAAAGAACGCTTTGATGGGGCAACAGAGGTGCGGCTAACGCGTGTGGGCTCTCGCACAGCTCTCCTTCCACGGGACCCCCAAGTAAAGCCACCAGCCACACGGGACTTGGTCTACTTGGCTCCTTCACCAGATTTCTGCCGACTGGACCCAGACAACGGAATTCCTGGCACTGCAGGGCGACGGTGtaatgGAACCTCGCGGTTGGCTCCAGACGGATGTGAGCTGCTATGCTGTGGCCCAGGTTTTCGAGCAGGTCGGGCTGAGGTGGTTCAGCGCTGCTCCTGTAAGTTTTCATGGTGCTGCTCAGTGCGCTGCCAGCAGTGTAAGAACACGGTGCTCATACACACCTGCCGAGAATAAGACACACCTGGAAAAACCACGCAACCACACCAGAAACACCTCATCTCACGTCAGACCTAAGAGCAAACTGCCCACAATATGAACAACCATTCCATCTAAAACACTCTGGATGATGTCAATTTTGGTGACTTTAAAACTTCAGAAATGACATTACAATTATGTTAATCTTCAATGAAACAAAGTGTTGTATTGAAACATGCAAACAACTTATTTTCTAAAACGCTCAAATACACATCAAATACAAAACCATTAACTAACTCGCTCAGACAACGCTCTTAAAGCTGAGATTAATCCCTGAATAACAGTGGGAGAATAATGTTAGTTTAGTCTATGAGGCATTAGCATTAAACTCTAGCGCAGAGCTGCTCTATctgttttttctgtatttataatttCTTTTCAGTTTTGCTGatcgtgtttatttatttgagttcATCATGCCTGTATGGCGTTATTTTTGGAATGAAGGTTCCCCTTGCAAACTCTCTGGCTTCAGCGGTTTCATATCAGCTTGTCGTATTACATAGAGGCCCGCCTCGTATATTACCATTGTCTTGTTTTTACAATCTATATGACCTTAAATAAAATTGTTTGACATTCC
>TCONS_00019957
ttttttttttcaaaaccttTGGATTTGCTCATTTGGTGGACAAACTGGATTATTGAAATGGCAACTTTTTAGAACTTATACTGCTCTGAAAGGGAAATAAATGCTTTTTAGGATTTTTGATGAACTTTTTAGTGAGGTAATTCTTTAAAAATGGAACATCTTCTCATTTTATCTGTATAAGTAATCATTTTGTCACCCCGAGTCATAGACTCAAGCAAAACGAGATatagattttgttttgttatggaTGAGCATGCCATAAGATGAATATCTCTCTGTGTGTGACAATAAGATTACAGCTTAGAGGCATTTTATCTTCAAAACACAAGTGGAAGTAATTAGAATAGATCGAGCTGATGATCAATTGGAATCATTTCTGAGACTCGGTTTGACATCGACAGGACTTTTTTGGAGCCTTTCGGACCTCAAACTGATATGAGGGGAACATCCCCAACTACACAGACACTACTGTAAGAGAGAAAACAGTATAGAGTTGAAAAGACAGACCGGCAGACAGACAGGCAATCTGATGCCAACAGTCTCCTCTGTGACTCTCACGGGACGACTCCTCCTGCTGTTGCTATGGGCAGCCCACCTCGCCATGGCAACCAACTGGCTTTCTCTGGCACGTCTGTCCCGCTCACGTCCCGTGTCTGGTGCAGAGCCATGTGGACGTCTGAGGGGTTTGTCTCCAGGCCAGGTCGGGGTGTGTCGGGCGCGGGGGGAGGTCATGGAGTCCGTGCGAAAGGCTTCAGAGATGGTCATCGAGGAGTGCCAACATCAGTTCCGAAACCGGCGCTGGAACTGCTCCACCACACCTCGGGGGATCAACGTGTTTGGGCGAGTCATGAACCAAGGAACGCGTGAAGCAGCTTTTGTTCACGCTCTCTCATCGGCAGCGGTGGCAGTGGCAGTGACCCGGGGCTGCAGCAGGGGTGAACTGGAGAGGTGTGGCTGTGACCGAAAGGTCAGGGGGGTCAGTCCTGAAGGTTTCCAGTGGTCAGGCTGCTCTGATAATCTGTCCTACGGCGTTGCATTCTCGCAAACCTTCGTGGACGAGCCGGAAAGAGCGAAAGGGATGTCTTCAGGACGGCCACTAATGAACATTCACAATAACGAAGCAGGACGGAAGGCCATCCTTCATAACATGCAGGTGGAGTGCAAGTGTCATGGTGTTTCGGGATCCTGCGAGCTTAGAACATGCTGGAAGGTCATGCCTCCATTCCGGCGGGTCGGTGCAGTGCTGAAAGAACGCTTTGATGGGGCAACAGAGGTGCGGCTAACGCGTGTGGGCTCTCGCACAGCTCTCCTTCCACGGGACCCCCAAGTAAAGCCACCAGCCACACGGGACTTGGTCTACTTGGCTCCTTCACCAGATTTCTGCCGACTGGACCCAGACAACGGAATTCCTGGCACTGCAGGGCGACGGTGtaatgGAACCTCGCGGTTGGCTCCAGACGGATGTGAGCTGCTATGCTGTGGCCCAGGTTTTCGAGCAGGTCGGGCTGAGGTGGTTCAGCGCTGCTCCTGTAAGTTTTCATGGTGCTGCTCAGTGCGCTGCCAGCAGTGTAAGAACACGGTGCTCATACACACCTGCCGAGAATAAGACACACCTGGAAAAACCACGCAACCACACCAGAAACACCTCATCTCACGTCAGACCTAAGAGCAAACTGCCCACAATATGAACAACCATTCCATCTAAAACACTCTGGATGATGTCAATTTTGGTGACTTTAAAACTTCAGAAATGACATTACAATTATGTTAATCTTCAATGAAACAAAGTGTTGTATTGAAACATGCAAACAACTTATTTTCTAAAACGCTCAAATACACATCAAATACAAAACCATTAACTAACTCGCTCAGACAACGCTCTTAAAGCTGAGATTAATCCCTGAATAACAGTGGGAGAATAATGTTAGTTTAGTCTATGAGGCATTAGCATTAAACTCTAGCGCAGAGCTGCTCTATctgttttttctgtatttataatttCTTTTCAGTTTTGCTGatcgtgtttatttatttgagttcATCATGCCTGTATGGCGTTATTTTTGGAATGAAGGTTCCCCTTGCAAACTCTCTGGCTTCAGCGGTTTCATATCAGCTTGTCGTATTACATAGAGGCCCGCCTCGTATATTACCATTGTCTTGTTTTTACAATCTATATGACCTTAAATAAAATTGTTTGACATTCCAAA
>TCONS_00019958
TGAGGGGAACATCCCCAACTACACAGACACTACTGTAAGAGAGAAAACAGTATAGAGTTGAAAAGACAGACCGGCAGACAGACAGGCAATCTGATGCCAACAGTCTCCTCTGTGACTCTCACGGGACGACTCCTCCTGCTGTTGCTATGGGCAGCCCACCTCGCCATGGCAACCAACTGGCTTTCTCTGGCACGTCTGTCCCGCTCACGTCCCGTGTCTGGTGCAGAGCCATGTGGACGTCTGAGGGGTTTGTCTCCAGGCCAGGTCGGGGTGTGTCGGGCGCGGGGGGAGGTCATGGAGTCCGTGCGAAAGGCTTCAGAGATGGTCATCGAGGAGTGCCAACATCAGTTCCGAAACCGGCGCTGGAACTGCTCCACCACACCTCGGGGGATCAACGTGTTTGGGCGAGTCATGAACCAAGGAACGCGTGAAGCAGCTTTTGTTCACGCTCTCTCATCGGCAGCGGTGGCAGTGGCAGTGACCCGGGGCTGCAGCAGGGGTGAACTGGAGAGGTGTGGCTGTGACCGAAAGGTCAGGGGGGTCAGTCCTGAAGGTTTCCAGTGGTCAGGCTGCTCTGATAATCTGTCCTACGGCGTTGCATTCTCGCAAACCTTCGTGGACGAGCCGGAAAGAGCGAAAGGGATGTCTTCAGGACGGCCACTAATGAACATTCACAATAACGAAGCAGGACGGAAGGCCATCCTTCATAACATGCAGGTGGAGTGCAAGTGTCATGGTGTTTCGGGATCCTGCGAGCTTAGAACATGCTGGAAGGTCATGCCTCCATTCCGGCGGGTCGGTGCAGTGCTGAAAGAACGCTTTGATGGGGCAACAGAGGTGCGGCTAACGCGTGTGGGCTCTCGCACAGCTCTCCTTCCACGGGACCCCCAAGTAAAGCCACCAGCCACACGGGACTTGGTCTACTTGGCTCCTTCACCAGATTTCTGCCGACTGGACCCAGACAACGGAATTCCTGGCACTGCAGGGCGACGGTGtaatgGAACCTCGCGGTTGGCTCCAGACGGATGTGAGCTGCTATGCTGTGGCCCAGGTTTTCGAGCAGGTCGGGCTGAGGTGGTTCAGCGCTGCTCCTGTAAGTTTTCATGGTGCTGCTCAGTGCGCTGCCAGCAGTGTAAGAACACGGTGCTCATACACACCTGCCGAGAATAAGACACACCTGGAAAAACCACGCAACCACACCAGAAACACCTCATCTCACGTCAGACCTAAGAGCAAACTGCCCACAATATGAACAACCATTCCATCTAAAACACTCTGGATGATGTCAATTTTGGTGACTTTAAAACTTCAGAAATGACATTACAATTATGTTAATCTTCAATGAAACAAAGTGTTGTATTGAAACATGCAAACAACTTATTTTCTAAAACGCTCAAATACACATCAAATACAAAACCATTAACTAACTCGCTCAGACAACGCTCTTAAAGCTGAGATTAATCCCTGAATAACAGTGGGAGAATAATGTTAGTTTAGTCTATGAGGCATTAGCATTAAACTCTAGCGCAGAGCTGCTCTATctgttttttctgtatttataatttCTTTTCAGTTTTGCTGatcgtgtttatttatttgagttcATCATGCCTGTATGGCGTTATTTTTGGAATGAAGGTTCCCC

Function

symbol description
wnt4b Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within negative regulation of mitotic nuclear division. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blastomere and nervous system.

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000411-1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within negative regulation of mitotic nuclear division. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blastomere and nervous system.

Ensembl:

ensembl_id ENSDARG00000040159

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019956 False 2207 mRNA 0.47 9 31802203 31813015
TCONS_00019957 False 2210 mRNA 0.47 9 31802203 31813018
TCONS_00019958 True 1645 mRNA 0.51 8 31804590 31812889

Neighbor

gene id symbol gene type direction distance location
XLOC_010035 CR855311.5 coding upstream 167608 31634470 ~ 31634595 (+)
XLOC_010034 SLA coding upstream 254403 31542645 ~ 31547800 (+)
XLOC_010033 ndrg1b coding upstream 284976 31511739 ~ 31517227 (+)
XLOC_010032 scxb coding upstream 400049 31396647 ~ 31402154 (+)
XLOC_010031 NA coding upstream 666772 31121756 ~ 31135431 (+)
XLOC_010037 mlf2 coding downstream 14484 31827502 ~ 31837482 (+)
XLOC_010038 atn1 coding downstream 40901 31853919 ~ 31868985 (+)
XLOC_010039 rps9 coding downstream 108794 31921812 ~ 31927522 (+)
XLOC_010040 phc1 coding downstream 129509 31942527 ~ 31960652 (+)
XLOC_010041 NA coding downstream 147890 31960908 ~ 31985059 (+)
XLOC_010030 NA non-coding upstream 707623 31090998 ~ 31094580 (+)
XLOC_010029 BX510336.1 non-coding upstream 831046 30970501 ~ 30971157 (+)
XLOC_010024 NA non-coding upstream 1471322 30329863 ~ 30330881 (+)
XLOC_010047 NA non-coding downstream 279694 32092712 ~ 32095684 (+)
XLOC_010052 NA non-coding downstream 465981 32278999 ~ 32365571 (+)
XLOC_010053 CR533571.1 non-coding downstream 584489 32397507 ~ 32509458 (+)
XLOC_010055 CR848729.4 non-coding downstream 859802 32672820 ~ 32672936 (+)

Expression


Co-expression Network