XLOC_010038 (atn1)


Basic Information

Item Value
gene id XLOC_010038
gene name atn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31853919 ~ 31868985 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019962
GTTTCAAAGATTCTCCGATAGGCAGCCTGTAGGCCAACCATTCAGTTTGTGGTCACACTTCTGCTTGCTGTAATGGCTGACTGGAAGGAATGAGGTAGTCATGAAGACCCGAACCCACAAAGAATCGATGCCCGCTCGAAGTGGACGTAGGAGGGGGGGCAGCGAGGAAAGGAGGGGTAGACGTCCGCACCCCAGCCCCTCTCGAGCAGAGCGCAATGAAAGGCAAACACAAAGAACCGCTGGAGAGGAACTCTCTGTTGGACGCTTCAACCGACGATCTCAAGGTCATGATTCATCAGAAAGTGAAGGGGAGGAGCATCTGCCACCACCTAAAAGACAGAAAGTCCAGGATTCCTCCAATCCCTCAGCACCACCTATTTCAACTAACACTCCGACTTCAGCTCCACCTCCAGCATCAAGCAACAGTCAATCAAGAGAAAGTGACAATGAGGATGGTCAATCACAAGGAAGTCGGAGCTCAGTAGTTGGCAGTTTAGCCAATAGTAGCAGTAGCATAAGCAGTGGTCGGGATATTGATCAGGACAATCGATCCTCCTCTCCAAGTCTTTCTGCTTCCCCCTTGGCTAGTTTGGATTCTGAATCTGACTCTCCAGATTCCCCTAAACAGGGTGACAAAAACAAAGATGGAGGGGGATCAAAGTGTGTAGCAGAAGAGCGGAGAGGTTCAGGAAGGAGTGAGGATAGCAGACCAGAGGACCAGAAGGACAGTGAAGGAGGAATCGAGGGAGATTTGTCTCCCTTGAAGTCCTCAGCATCCCACTATACATCTCATCATGGAATGGTGGACAATACTAATGATCCAAGTAGCAACAGGAAGTCATACTTCCCCCTGGATTCCAAAGTTGCAAGCAAGCTAGAGTATACAAGTCCTGGTGGTCCTGAGGTGATACACACCAGCAGTCGCATCCCTTCTAAAACaagcactcagtgtgggaaaccTGGGGTGGGTGGAGCTGAATATTCCCATGGGAATTCAAATGTGAGCCACGCATCACCACTTCCACCTCCACCTGCCCTGAAACCTCTAGAGGTAGGGCAGAATGCTCCAAGTGGAGACAGTAAAGCAGACAAACCAGAGAAAGGTGATAAGTCTGCTCCACCTTCCTTGCTTCCGCAAACTAGTACCATTCCCCAGCAGCCTCCTCCTCCCAACACTCATCATTACACCCCCACCAGCTGGTCAGGGGGACCTCCCACTAATTGTCCTGGCAACTGGGGATATGTACGTTACCCAGGTAACCACCACACACATCCAAGCCAGCAGCCCCCAGTACAGCAACAGCTACCATCAGTGTACAATACTACTTCATCCACTCGACACTCTTCCCACCCACCTTACCTTTCTCACCCTCATCCACATCCACACAAAGAGTTTCTGCCCAGGTATGGCACTACAGCTGAGCGAGAGAGGGCAGGGAGGGAGTTTGGTAACAGAGACTTCCCTGCTAGTAATAGCAGTAGCAATGCAAACAGTAGCAGTGGTAGCATCTGTGGTAGCACTTCTGGTGGTGGTGGACCCAACTCCAATGTGAGCCGAGATTTTGGGACCTCTATACCTGGACAAAGCAGAGACTATGCCTCAAACCGGGATGGACCTTCAGGACCACAGAGTGGTCGGGAATATGCACCAGGGTTTAGAGATCGTGAACGAGGGACTGGTAGAGAATTTCCTTTGCCAAACCAGCAACTTCAAGCACAGGGCAGAGAGTTTGTACCTGAAAATACTGGAGGGGGAGGATGTCATTCAAGAGACAAGGAAAATAGGTGGGGAGAATTATCAAGCCAGGTTAGGGAGTCGGGGAGTAACAATTATGCTGGTAATCCCAACCAAGCACCTGTTGGTGCCCAGTCATCTGCGCTACCTTCAGCCACCCTGGCGAATCGTGACCCAACCAGTTCACCACAGAACAGTACTAGTCAtccttctttttccactgcaaatTCCATCCCTCCAAACAGAGACTATTCCTCTCCTATGGATGCAAATGTGCAAGGACAGACTCCCCAAGCATCGTCCAATTCTGCAGACCTTCCTCCCCCTCCACACTATTTAAGAGAGTACCCCCCTCCTGGAGCAAAGGATCCCTATCCCCCTCCTGGATCATCCTCTTCATCTGTCCCACTTTCTGGTGTGCAGAGGGAGTTCCCAAGCCCACCTGGATTGGCCCCAAACCTTACTCGAGAGTATCCTGGAGGACCACTTCCTCATCACTCTCACTATCCTGGCCAGACAGGGTTGCCTATGCAGCATAGAGACAGAGAGCGTGAAAAGGACAGCACAGCATCTTCTCTTCATTCAAATCGTAATCATCCCCCATCTCTTTCTCCTTCATCAAGTGGCTCTGGCACTGGACATGGACACCCCACATCTTCTACCTATCCCCCTCCCCTTCCTCCACCCTCAACTAGTTCACATGGTCAGCCTCCACCCATTGCATCCCTTCCAGGCAATCATGCTCGACAAGGCCCATATTCTTCATCTAATCAGACTCCACCAACTCCACTCTCGCCACTGCCCAGTCCCTCAAACAATCCGATAGGAGGTTTCACTTTTCCATTAACCTCTGCTCCTTCTGTACCACTTCCCGCATCAGGTGTGTCCACCTCTTGTCCATCAGGTTGCAGACCTACTCCTTACCATGGCACTTTAAGCAGTCATACTCCATTCAGTAGCTCTTACCATGGCAACGGAAACCATGGAAATAGCAATGCCAGTGGCAATGCTCCCAACAACAGCAATAGCACTAGCACTCCATCACTACTGCACTCCCCTCAAAACAATAAAGTACAACCACATATTGGTAACGCTGGCCATAACAACAGTACTTCAACCTCCAGCACATCTCTTGGAGGAGATGGTCACCCTGATTCATCTTCTGGCCCAGTGCCACCAACTGTCATCAAAGAGGAGCCAGTAGAGGAGAGGGAAGAATTAGAGAGCCCACCTCCAGTTCTCCGAAGTCCTTCCCCAGAGCCAAAACCTGTTGACATTCCAATCCATGCTAGCCAATCAGCTCGGTTTCACAGGGTTCTTGACAGAGGAAGTGGGAACTCTTGCGCCCGTAGTGATGTTCTGTTTGTTCCACTTGATGGTTCTAAACTTTGGAAGAAAAGAAACGAAGCCATAGAACGTGCACGTAGAGAAGTTGAACAACGAGCAAGAGACCTGCGAGAGAAAGAGCGGGAAcgagagagagaaaaggagagagaaagagacctGGACAGACATCTGCAGCAGAAGGACAGTGGCACAAGTGCTGGTTTAGGAGCTGCAGGAGCACGCCAGGGTTCTTCGCTCTTCTTTCCTTCCTCCTCCTCCATCCTTCTAGACCCTTCATCTTCTTCATCGTCCTCTGTGAACCCATCCCACCCAGCAGTTCATCCACAGCACCACCCTGCCCACCATGCCGCCCACCCCCACCACATTCACCCTTCTCATCTACATCCCTCTCTTTCTCACTCCATTCCTCATTCTCTTCTCCTCCCTTCCATGGCAGGGGGCTCTCCAGTTGTTGGAGGCCCTCAGGGTGCTCTTGGCATTGGGCTTGGAGGTCCATACTTGGGCCCTGATACCCCAGCCCTCAGAACCCTGAGTGAGTATGCCCGTCCTCATGCCATGTCCCCACTAAGTGCTGCCGCCCGGGCACAGGCACACCATCCACACCTTCACCACCACCCTCAcccacacatgcatgcacacgctCAAGCCCACCCCCATGTGCATCCTTCATTTTTCCTGTCTCAATTTCAAAACCCAGCACTTGCACACCCCCACCACCTTCCTGCCGATGCTGCCACGGCTGCTGCCATTCTGGGCTTTTTGTATGGGGGTGGGCTAGAGGGAGGCCCTGTCCATCCAGGGCCTGGTCCTGGGCCTGGGGGGTTGGCTGGGGCGGGGCTTGGAGGAATGGGATTCCCTCATGCTGTCGCAGCTCAAAGAGAGCGTGTAAAGCCAGGATTTGAGTTTAAGAGCGAGGAGCGTGTCTACACAGCTGGAGCCTTAGCTGACCCGGCAATAGCTTTGTCACACGCACACTCGCACGCACACTCACACTCCTTGCTGCTAGGGGGCGGAGCCGGAGGCGGACCTCCTGTTAGTGAGGTTGCCCTTTATGGTACAACTCCACCTCCTGCTCCACCCCCTCAAGCTTTAGCCGCAGCAGCTAGGAATCCGAATCCTGTTCCTCCACCTCTTTCAGTCCCACCCACATCCTCGATTCTTCCAGCCACACTCCCTACCCACCAGGCTCCTGCTGGAGCACCAGTGACGCCAGCAGCCTCTGCACCTCCCCCTCAACCTCCTCcccctccacctcctcctcctcctccaacaGCCTCATCTCTTCATCACCCCTCTCCACACTCCACCTTTCCCACCACACACCCTTCTTGCCAGCCCCCACCCCTCCCAGCTCAGGCTCCGCCCTCTGAGCGATATCCCACCCCCGTTCGCACTCCTCCCAGCACCGAACGGGCACGGAGTGTGGAAAGGGAGCGGGAAAGAGAGAGAGTCATCCCTGCTGCAGAGAGGGAGCGAGAGAGGGATAGGGAGAGGGCTGGGACAGGTGGAGGAGCAGCAGGAGGAGGCACGAcggctggaggaggaggaggcacAGGAGGTGGAGATTCTCTCAGCCGGCTACAGATGCTGAACGTGACTCCTCATCATCACCAGCACTCACACATTCACTCTCACCTACATCTGCACCAGCAGGACACAGCCGCGGGAGGGGTACACCCCCTGATGGATCCGCTGGCATCAGGGTCTCCCCTGGCCCGTCTGCCGTACCCAGGGGCTGCTCTTGGGCCTCCCATCCTGGCACACTCCCTCACTGACAGCGAGGTGCTTCGACAGCAGCTCTTTGGTGGTCCTTTCCGTGAAATGCCCCAGTCCTCGTCTCTGGGTGGCTCCATGTCCGCAGCGCACCAGCTCCAGGCGATGCAGCAGGCTCAGAGTGCCGAGATTCAGTTTCAGAGACTCGCCCTGGAACAGCAGTGGatccaccaccatcatcatcactcCCTCACGCAGGACGAGTACTACagCCACCTAAAGAAAGAGAGTGATAAAACGCTGTGAGAAACACAGAGGACATgaagacaagaaaatgaagaagGGATGaagtgcaaataataaaaaaataaacaatcatttCAAAAATTCAGCACTGAACGACAGCAAACCTGAACTGAGATGTGGATGTGACATCTGAACACATATCATTCAATCTGAACGAACCTAAACACAGGTGCAGCAAACAACGTGTATATTCCAAAAAGGTGAGATTTATTACTCTGGCACACAACCTAGACTCTGTGGCACTGAGCGGAGATTCCCCAAGGATTCCTCGTTGTGTTATTTCATAAGGAGTTTAAGCTGTGGTTCAGTCTGTGTACACTACATTATGCCAGAGAGAATGTCTAAATATCAAGTTCACTTTTATGTCTTTGCATGTAGCTAGATACAAAAGGCCCAGTGGGCTAAAACTCTTGAtctgtttttccttttttgtttgtttctggaaAAATGGACCACTCTGAAAGAGTGTTTATGAAAGGGTGCATGAGATAAACAGCTTACCTTCATAATGTTTCTTTATCGTGttcttattaaaatgattaatgttgtttgtttgttaataattatatgattatataaacattattttttattatttttttacattttcatggtaccgctgtttattttttatgttcaatttacctTGTGGGAGAAAAAAATGCaagataaaagaaaaatctgGAAATAAAATACCATTTTTTTCTATGA

Function

symbol description
atn1 Predicted to enable transcription corepressor activity. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in dentatorubral-pallidoluysian atrophy and schizophrenia. Orthologous to human ATN1 (atrophin 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003714 transcription corepressor activity molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-426 Predicted to enable transcription corepressor activity. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in dentatorubral-pallidoluysian atrophy and schizophrenia. Orthologous to human ATN1 (atrophin 1).

Ensembl:

ensembl_id ENSDARG00000092067

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019962 True 5812 mRNA 0.51 9 31853919 31868985

Neighbor

gene id symbol gene type direction distance location
XLOC_010037 mlf2 coding upstream 16437 31827502 ~ 31837482 (+)
XLOC_010036 wnt4b coding upstream 40901 31802203 ~ 31813018 (+)
XLOC_010035 CR855311.5 coding upstream 219324 31634470 ~ 31634595 (+)
XLOC_010034 SLA coding upstream 306119 31542645 ~ 31547800 (+)
XLOC_010033 ndrg1b coding upstream 336692 31511739 ~ 31517227 (+)
XLOC_010039 rps9 coding downstream 52827 31921812 ~ 31927522 (+)
XLOC_010040 phc1 coding downstream 73542 31942527 ~ 31960652 (+)
XLOC_010041 NA coding downstream 91923 31960908 ~ 31985059 (+)
XLOC_010042 mboat7 coding downstream 145567 32014552 ~ 32026333 (+)
XLOC_010043 tmc4 coding downstream 160105 32029090 ~ 32050153 (+)
XLOC_010031 NA non-coding upstream 718488 31121756 ~ 31135431 (+)
XLOC_010030 NA non-coding upstream 759339 31090998 ~ 31094580 (+)
XLOC_010029 BX510336.1 non-coding upstream 882762 30970501 ~ 30971157 (+)
XLOC_010024 NA non-coding upstream 1523038 30329863 ~ 30330881 (+)
XLOC_010047 NA non-coding downstream 223727 32092712 ~ 32095684 (+)
XLOC_010052 NA non-coding downstream 410014 32278999 ~ 32365571 (+)
XLOC_010053 CR533571.1 non-coding downstream 528522 32397507 ~ 32509458 (+)
XLOC_010055 CR848729.4 non-coding downstream 803835 32672820 ~ 32672936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_09235085_09240022 NA coding CI01000027 null 9235085 ~ 9240022 (+)