XLOC_001005 (abcg2b)


Basic Information

Item Value
gene id XLOC_001005
gene name abcg2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8673061 ~ 8691969 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001599
GTTCATTTCACCAGGATATTCCtcacttttcctctcctcttcaGCTCCATGGAGGTGTGTGAGATAAAAATGCTGCCTGCTTTGGAGAGTGATGGCGCAACAGTGCATGTAAAAGTGCCAGGACCAATTCTGACATACCAGAATATTCACTACTGTATTAGAGAAAGCCGTGGGCTGTGCTGCAAGAAAGCACCTGAGAGAGACATCCTGAAAAATGTCAGTGGAATCATGAAAACAGGACTGAATGCAATCATGGGAGCAACTGGAAGCGGCAAAACATCGCTGTTAGACGTGATGGCTGGTCGCAAGGATCCTCGTGGTTTGCGCTCAGGTCAAGTTCTGGTTGACAACAAGCTTGTGACCTCTGACCTCCGACTCATGTCTGCTTATGTAGTACAGGATGATGTCCTGATGGGCACTCTGACTGTGCGGGAGAATCTTTTATTCTCTGGAAATCTGCGCTTACCAAGGGAACAGTTTTCCAGTgctgataagaaaaaaaaagtggagaGCATCATCGAGGAGCTTGGACTGGAGGACTGTGCAGACACCAAGATTGGTACTGAGTTTATAAGAGGTGTGTCAGGAGGAGAACGAAAGCGCTGTAGTATAGGAATGGAGCTCATCACGTCTCCTACGCTTCTGTTTCTGGATGAGCCGACCACAGGCCTGGACTCCAACACTGCCAACAGCATCATTGCTCTCCTGCACAGGTTGTCAAGAGGTGGTAGAACGATAATTTTCTCAATCCACCAGCCACGTTATTCAATCTTCAGGCTCTTTGATTACCTGACGCTGATGCATAAAGGAGAAACCGTTTATGCTGGCCCTGCTGGAAAAGCCATCGACTACTTCCAGAGTCTGGGTTATGAGCGTGATGCTTTCAACAACCCTGCAGATTTCTTTCTGGACATAACCAATGGAGAGACGGCTACTTCAATGCCAACAGAGAAGTCATTGGCTGAGCTTTACAGAGAGTCTCAGTTCTGCACCGCCGTGGACGAGGAGCTGAAGTGCATCACTGGACCATCAGATTCTTTATCTGAAGCCAAGAGCAAAGCACCATCCTATGTCACGTCCTTTAGCTATCAGttaAAGGTGGTATGTTGGAGGACAGGGCTGAATGTTGTCAGGAATCCTCAGACGTCATATGCTCAGATTGCAATGAACATCCTCTTTGCTCTGCTGATTGGACTTGTCTACTATCAGATGCCTTTAACTCTTCCCGAAGCCCTACAGAACAGGATTGGCGCTTTCTTCTTTCTCATCATCAACATGGTTTTTGGCAACTTGTCAGCAGTAGAGCTCTTCATTAATGAGCGAGCAATTTTTGTGCATGAAAACTCTGGAGGATATTACCGTACATCTGTGTATTTCCTCTCCAAGGTGTTCGTGGATCTGTTACCAAATCGCATTGTCCCGATTTTAATCTTCTCCAGCATTTCCTACTACATGATGGGGTTGAATCCAGCATTCACATCCTTCCTGTGCTTCGCGTTGACCATGTCTCTGGTCAGTCTAGCAGGAGTGAGTTTGGCCTTTCTGGTCAGTGCCAGCGTGAGCACTTTCGCCATGGCCAACATCCTCGTCGTCTTGCCTTTCGTCTTCATGATGgtGTTCGGAGGGTTTCTGGTGAATCTGAACTCCATGCTCAACTGGTTGTCCTGGCTCAAGTGGATCAGTATCTTCAAATATGGACTTGATGCTGTGACTataaatgaaatgaaagggcTGGTCCTCTATAGTGGCAATGCTACACTGCCAGGAGAGCTGTATCTAGAGTCTCAGGGCATCGACTACAGTGTGTGGGGTTTCTGGCAGAATGAGGTGGCCCTTCTGGGAATTGTACTGGTGTGTATGACATTTGCATACATACAGTTACGCAGGATCAACCGCTGGAAATGACGAACAAACCATCCATAACCGTTTCCCCCCATACACTGAAATTTCATCAAAGGTTTATTTTTGTAAACCAGCTCTGTTGTATCTCTGATTCACTGTTTGCAGATTCTAATACTTGAATTTAATAGCTACTCTTGACTTATTTTGTAAACTAGAAttactaaaaaaattatatatattttttatttaaaagttattttattaagttatttaatgtttaataccGAACTGAAGTAGTGAAAGAATGAttagttaattattaaataactattttattatttttctgccaaaaacACTATTTTTTTCACACAATTGCACAAAATTTCACAGTTACTGAGATATAgtgtgatgtaaaaaaaataaatgttcttaATTCTCCATGGGGAATGTATGATGCACTGCAAAAAGATGCATGGTGATGAAATTGGGTCTAGCTTAATTACAatttgaatctatctatctatctatctatctatctacctatctacctatctatctatctatctatctatctatctatctatctatctatctatctacctatctacctatctatctatctatctatctatctatctatctatataatgatcaatatgtttgttttttactacAATGTGTTGCCTATTAGTGAGTAAATTAACCCATTGAGGTCTATTTTGAGTCAAAGAAGATatgtaaaagctttttaaaatgtatagcccttaataaagaaacaaattatgCAAATGCTATATAACACCTCCAAATGCACAATATGTTTGAGACttaacctttaaaaaaagttCATATTTCTTATTGCTTATGCTTATGCTTATTTCACTCGAGgtgtcaaaaaataataatgtaaataatgtgtaGCCCTTTCCCCATATCTCACATATCTGAAAATGAAATTCGTAAGGATGCATATGACTGCATGTATTGCTAGTATTGACCATTCATTGGACATTTTTGTTATCTGGAAGTgaaagtttatgtataaacttagtaaataaatgtattttatttaaaaa

Function

symbol description
abcg2b Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestine.

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-36 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestine.

Ensembl:

ensembl_id ENSDARG00000079361

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001599 True 2918 mRNA 0.40 15 8673061 8691969

Neighbor

gene id symbol gene type direction distance location
XLOC_001004 actb1 coding downstream 19676 8649099 ~ 8653385 (-)
XLOC_001003 fbxl18 coding downstream 26120 8638162 ~ 8646941 (-)
XLOC_001002 NA coding downstream 47795 8612575 ~ 8625266 (-)
XLOC_001001 NA coding downstream 85702 8579155 ~ 8587359 (-)
XLOC_001000 ptcd1 coding downstream 106494 8555323 ~ 8566567 (-)
XLOC_001006 grin2ab coding upstream 71460 8763429 ~ 8928841 (-)
XLOC_001007 socs1b coding upstream 270655 8962624 ~ 8966046 (-)
XLOC_001008 NA coding upstream 282531 8974500 ~ 8977963 (-)
XLOC_001009 NA coding upstream 286936 8978905 ~ 8980671 (-)
XLOC_001010 NA coding upstream 389873 9081842 ~ 9082772 (-)
XLOC_000998 NA non-coding downstream 162995 8504977 ~ 8510066 (-)
XLOC_000996 NA non-coding downstream 467833 8202390 ~ 8205228 (-)
XLOC_000985 CR855320.6 non-coding downstream 752855 7920119 ~ 7920206 (-)
XLOC_001015 NA non-coding upstream 446669 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 non-coding upstream 465341 9157310 ~ 9162637 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00495650_00505028 ABCG2B coding CI01000300 null 495366 ~ 505028 (-)