XLOC_010053 (CR533571.1)


Basic Information

Item Value
gene id XLOC_010053
gene name CR533571.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32397507 ~ 32509458 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019990
gcCAAACTGTAAGTATCTGTTTAGGTCAGTGTTCATGCTTAGGCTTGCGTGTCCTTATGAGTTGTGTGGATCTCTGTGTCTTTCCTATCTGCAGATGTGGATGTGCTCGTGGCAGAGGTGTGGAGCAGGTCAGGATGGATGAGGTTTCCAGGGCTGAGTTCTGCTCTTCATGTCGACACCACGGACACGATTCTCACTCTGGACAGCCATCCTTCTTCAAAGAGCCCTACTTTGCCATCATGGCGGTCACTCTGATTGGCACCGATGACGGCAGTTCTCGACTGttcttttGAATGGAAACCAGAAGTGCAACCTTTAATTTGAAATACAGAAGTCACCTGCGGGAAAATGGTGGATACAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117783

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019990 True 362 lncRNA 0.49 3 32397507 32509458

Neighbor

gene id symbol gene type direction distance location
XLOC_010052 NA coding upstream 31936 32278999 ~ 32365571 (+)
XLOC_010051 klhl32 coding upstream 121477 32238020 ~ 32276030 (+)
XLOC_010050 zufsp coding upstream 200736 32184485 ~ 32196771 (+)
XLOC_010049 gprc6a coding upstream 238474 32152612 ~ 32159033 (+)
XLOC_010048 sphk2 coding upstream 250325 32131568 ~ 32147182 (+)
XLOC_010054 pou3f2b coding downstream 50363 32559821 ~ 32563092 (+)
XLOC_010055 CR848729.4 coding downstream 163362 32672820 ~ 32672936 (+)
XLOC_010056 si:dkey-165n16.1 coding downstream 219765 32729223 ~ 32734765 (+)
XLOC_010057 zgc:172323 coding downstream 227130 32736588 ~ 32744258 (+)
XLOC_010058 prdm13 coding downstream 240133 32749591 ~ 32755900 (+)
XLOC_010047 NA non-coding upstream 301823 32092712 ~ 32095684 (+)
XLOC_010041 NA non-coding upstream 412448 31960908 ~ 31985059 (+)
XLOC_010035 CR855311.5 non-coding upstream 762912 31634470 ~ 31634595 (+)
XLOC_010031 NA non-coding upstream 1262076 31121756 ~ 31135431 (+)
XLOC_010060 NA non-coding downstream 549441 33058899 ~ 33063159 (+)
XLOC_010065 NA non-coding downstream 670648 33180106 ~ 33214537 (+)
XLOC_010066 NA non-coding downstream 741032 33250490 ~ 33293780 (+)
XLOC_010067 AL954832.1 non-coding downstream 833693 33343151 ~ 33343265 (+)

Expression


Co-expression Network