XLOC_010054 (pou3f2b)


Basic Information

Item Value
gene id XLOC_010054
gene name pou3f2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32559821 ~ 32563092 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019991
GGTTCCTTTAATAGGAGCGATCAGTCCGGCTCCGAGAGTCATGGCGACTACAGCATCCAATCATTACAATATCCTCACCTCCAGTCCATCTATTGTACACTCGGAGCCTGGAAGCATGCAGCAAGCTACGGCTTACAGGGACGCGCAAACCCTGTTGCAGAGTGACTACTCACTGCAGAGCAACAGTCACCCGCTCAGCCACGCGCACCAGTGGATAACAGCCTTGTCACACGGAGAAGGAGGTCCGTGGTCGTCCAGTCCCCTCGGCGAGCAGGACATCAAGCCAGCGGTGCAGAGCCCCCGGGACGAGATGCACAATTCCAGCAATCTCCAGCATCAGTCGCGGCCACCCCACCTGGTACATCAGACGCACGGGAACCATCACGATTCAAGGGCATGGAGAACAACGACGGCAGCTCACATCCCCAGCATGGCCACATCGAACGGACAGAGCCTTATTTATTCGCAGCCCAGCTTCAGCGTGAACGGTCTCATTCCGGGCAGCGGCCAGGGCATCCACCACCACAGCATGCGCGACGCGCACGAGGACCACCACAGCCCGCATCTCAGCGATCACGGCCATCCACCGTCCCAGCACCAGCACCAGTCGCACCAGAGCCACCACGACCACTCGGACGAGGACACGCCGACCTCGGACGACTTGGAACAGTTCGCCAAACAGTTCAAGCAGAGGAGGATCAAGCTGGGCTTCACGCAGGCGGACGTCGGACTAGCTTTGGGAACGCTCTATGGAAATGTGTTTTCGCAGACCACAATATGCAGGTTTGAGGCCCTGCAACTCAGCTTCAAAAACATGTGCAAGCTCAAGCCTTTGTTGAACAAGTGGTTGGAGGAGGCAGACTCCACATCTGGAAGCCCCACGAGCTTGGACAAGATAGCAGCGCAGGGGAGGAAACGGAAAAAGAGGACTTCCATCGAGGTAAGCGTCAAAGGGGCTTTGGAGAGCCATTTCCTTAAGTGCCCAAAGCCAGCCGCGTCGGAAATTACTTCACTGGCGGACAGTCTGCAGTTGGAAAAAGAGGTAGTGAGGGTTTGGTTTTGTAACAGGAGACAGAAAGAAAAACGGATGACTCCTCCCGGCGGACCTCTACCGGGTACCGAGGACGTATACGGAGACACGCCGCCGCATCACGGGGTTCAGACGCCAGTTCAGTGAGGGGGGAGAGAAAAACACTCAAAAAACACTTACAAAACAAGGACATATCTTATCATATTGACTGCTTCAGTCTTCATTTATGATTATGTTCACATTGGAACTATCCAAAGTGAAAGCAGCTGCGGTTTAGACTACTGAGGCGGGCGAGCAGATTATATCCGTCTTCAATGTTTCTCAATATTCGTAGGCTACTGCTGCAACAGAGAGGGGGACCGTGCGTTCCCTGCGCGAGCAAAGAGAACGGTTGTTCTGTGAATACCCAGCACTGTGAAAAGACGCAGTTTTAAGGTGTAACCCTACTATTTATCAAACACTTTGAGACGAGCGAAATGTCCCTCAAACGCGAGCATGGGTGTCCCATAGCCAGTTGTTTACATCGAGACGCATTCACTGCATTTGCTTTTGCAGGCTTAGCCTGAAAAGTGACTAGTGCTGCAGCATTTGACAAATACACGCCATTTTTACTTTTGTTGTGGGCGACTGAGGGTGAACATCGATTCTACTGAAAAACAACATCAGTGTGACATGCATCTATCTACAGTATTTGACTATTTATTTTGATCAAAAGGCctttaaacgtttattattattattattattattattattattattattattattattatcaggctATTTTAGATACATTATATTTACTTATAGAAACACAGTGATGAGGTGCAAGGTCACACTAAGCAGATGTTGTAGTCTTGGCGCCAAGAAATTAGTCACACACAATTGATTCTAGTCTCTTCTAGTCTCCGTTTTATCAATACGGATGCTCTAAATTGAAAAGAAATCAAAAGAAACTTCCAGCATCGAGCTGCAGACAGGTCGCCGAAGGGCTAGAGAAAGAAACCTGGCATTTTTCTTCGATAAAAGACGTATCACCATAAAATACAATTGATTGACAGGACTCCACACAGTGctgtaaatattgtataatttttAAAGGACATAGCTACGTTATTCTCTCACTTGAGCACTTTTTCGTATTATTTTGAATTGGGGAAATATTTTAGaggttttggtttatttttatttgcgtCTCGATTTGTTTTGACATTAGAGTTGGTCTATTTTGCCTTTATATTTATAGTCATTTTAGCCGAATATTGCTTGCTATCTCTCGCGTGAGTCAGTTGCTTTTTAACCCACATTCAGCtgcttttttataaattaatgagCTGACTTTACTATATGTTTATGTATAGTAAACAATGTTCAGTTTTCAACAATGTTAGCACTATTTTCTACCCAACGAATTCAATATTATATATCTCAAACATTTGaatgtctttttttaattattttgaaatagAGGTTATTTACACAGTATTGTGGAGAATGGGAAAAGCAAATGATGTGACATGCAATATTTTCATTTCAAGTCAAATAATTCTTCATTGGTCCATATGACAAAGcggtttttgtgtattttataatttcatcAAGCATATCAATCGGAAACACGAGCACTATTATTGTCagtattgctgttattattattattattattattattattattattattattattattattattaaatagtctCCACGTTTACCCAATAACGGATCTAAGGATACTTGGGTTTTTGATTGATCAGTTtagttttctttgtatttttttttttttcttgtgtgttttgtAATTCTTCGTTGTGTTAGTCCCGCTTCGCCTTTATAGGGACACGATGCAGTGATGATTTACTGAAAATGTAAACActggaatatttgcaaaaatggGAATATATTTTCCCAGTGGCTTGCTATACGTGTGTAAATACAGCAatcagaaattattattatttttattttcttattgtattatttttgcttacattttaattcatatttttaatgtaaatctaTTCCACTGAAATTCCAGGGACATCtgtttttatctttttgttttgttccttAAAAGAATCATTTACATAGATTAATTGATCAAACTGTCATGTAATTCAAAGACTGTGGGAGCTATTTATTTGTCGTTTTATTTCCTCTGTCAGAAAGACTCCATCAAACGTTGAACTGGATGAAATTGTGGGTATAATAAAATGCGCAGAGGTTGTGATAGAAATTT

Function

symbol description
pou3f2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endothelial cell development. Predicted to be located in nucleus. Is expressed in central nervous system; midbrain neural keel; neural rod; and presumptive diencephalon. Orthologous to human POU3F2 (POU class 3 homeobox 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0001885 endothelial cell development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-370 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endothelial cell development. Predicted to be located in nucleus. Is expressed in central nervous system; midbrain neural keel; neural rod; and presumptive diencephalon. Orthologous to human POU3F2 (POU class 3 homeobox 2).

Ensembl:

ensembl_id ENSDARG00000076262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019991 True 3272 mRNA 0.42 1 32559821 32563092

Neighbor

gene id symbol gene type direction distance location
XLOC_010053 CR533571.1 coding upstream 50363 32397507 ~ 32509458 (+)
XLOC_010052 NA coding upstream 194250 32278999 ~ 32365571 (+)
XLOC_010051 klhl32 coding upstream 283791 32238020 ~ 32276030 (+)
XLOC_010050 zufsp coding upstream 363050 32184485 ~ 32196771 (+)
XLOC_010049 gprc6a coding upstream 400788 32152612 ~ 32159033 (+)
XLOC_010055 CR848729.4 coding downstream 109728 32672820 ~ 32672936 (+)
XLOC_010056 si:dkey-165n16.1 coding downstream 166131 32729223 ~ 32734765 (+)
XLOC_010057 zgc:172323 coding downstream 173496 32736588 ~ 32744258 (+)
XLOC_010058 prdm13 coding downstream 186499 32749591 ~ 32755900 (+)
XLOC_010059 prss35 coding downstream 432790 32995882 ~ 33004852 (+)
XLOC_010047 NA non-coding upstream 464137 32092712 ~ 32095684 (+)
XLOC_010041 NA non-coding upstream 574762 31960908 ~ 31985059 (+)
XLOC_010035 CR855311.5 non-coding upstream 925226 31634470 ~ 31634595 (+)
XLOC_010060 NA non-coding downstream 495807 33058899 ~ 33063159 (+)
XLOC_010065 NA non-coding downstream 617014 33180106 ~ 33214537 (+)
XLOC_010066 NA non-coding downstream 687398 33250490 ~ 33293780 (+)
XLOC_010067 AL954832.1 non-coding downstream 780059 33343151 ~ 33343265 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_09661837_09663114 POU3F2B, POU3F2 coding CI01000027 null 9661523 ~ 9663857 (+)
bowfin (Amia calva) G5141 pou3f2,LOC106584047,LOC106605033 non-coding CM030121.1 CM030121.1 29697667 ~ 29699224 (+)
tiger barb (Puntius tetrazona) G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 unknown NC_056714.1 CM032083.1 23519808 ~ 23524382 (-)