CI01000057_03629306_03634635


Basic Information

Item Value
gene id CI01000057_03629306_03634635
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3628504 ~ 3634635 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03629306_03634635.mRNA
ATGCCTTTAAAGACTTGTGTATCTTCAATATATACAGACTGGTGTGAATCGTCGATAACACTGAACCGTACAGCAAGTATAGACTGTTCTGAATCGTCTGTCAAGAGAGAAGCGTACTTCAGTAGCGATGACGTCACAATGAAAACCAAGAACCACGGACATATTGTTACTGTTGCAAGCACTCTTGGTCTGTTCAGTACCGCTTGTGTAGAGGACTATTGTGCTAGTAAATTTGGAGCTGTAGGTTTCCATGAATCTCTGACTCATAGTTTGTTAACAGAGGAAGGTGTGGATGGGGTGAAAACCACCCTGATCTGCCCGTACATCGTCAACACTGGCATGTTTGCTGGATGCCAAATCAGGAAGGAACTCCAAGGCCTGATTCCACCTCTGGATCCTCTATACTGTGTTCAGGAGTCAATGAAAGCCATTCTGGCTGACCAGCAAATGGTCTGCATCCCCCGCGTAATGTACTTCGCTATCCTCTCGCGGGCGTTGCTCCCCTGGGATGCTAATGTAGCAACATATCGTTTCATGGGAGGCGACAAGTGCATGTATTCCTTCATTAAGACCAAACAACAGCAACAGGTTGTTAACGGTCATGTGAAATCCTCTTAACTATCCTGTAATAGCTCCACACATCATCCACATTTCAAGGCGAAAAGCCAAGAGTGCATTCACAGAACGAAAGCATTTTTGCTTTTATCATATTTTATATATATATATATATATATAAAAAGTATAAATGTATTTCATGGGGACCAACAGAAATACTTTGTTTTTATTTTTCTGTACAAAAAACATACTGTATTGTAACATCAGAATGAATCTGTGCAGATTTATTATACTATTTGCTATATAACAGTAATATAGCTTTTAAATGTAACAATATATTTAATTTTTAATGTTATAAATAAGTGGCATTTACTAAAACAGCTTAAAATAGGCACACACATTCAAGTAGGAGTAACAGGGCAAAACTAGGGCAGGTTATTAAA
>TU279511
TGTATTGTAACATCAGAATGAATCTGTGCAGATTTATTATACTATTTGCTATATAACAGTAATATAGCTTTTAAATGTAACAATATATTTAATTTTTAATGTTATAAATAAGTGGCATTTACTAAAACAGCTTAAAATAGGCACACACATTCAAGTAGGAGTAACAGGGCAAAACTAGGGCAGGTTATTAAAGTGAGCTGGTTAGTAAAATTAATGAACTACATGTGTTCACTATAGGGTTAGAGTTAAATATGCATAATCTGTTATTACTATAGGGCATGTTGTATCAGGACTGTGAATGGACTACATGTGATGTGGTGCGAGTTTGAAAGTATGTAATCCATGCTTTAAGTCATCAATGGGCTAAAAAAAAAAAAAAAATGATTAGATTGCTTTTATGAATCAGAAATTTACATAAAATGTAGTGATAGAGTGGTAAAATTAATATGTTACACAAACTCATTTTGTTGATTGAAAACTTGACTTTGCATTATGGAAAATCAATATATGACAGTCTTTCCTGGAATGCAGTGATCTGTGAAATACGATCAGCTTTAGCGTGTGATGTAATGAACAGCTGAGTACAATACAGCGATTGTGGTCTTCAGCTCCTC
>TU279526
TGAAAACCAAGAACCACGGACATATTGTTACTGTTGCAAGCACTCTTGGTCTGTTCAGTACCGCTTGTGTAGAGGACTATTGTGCTAGTAAATTTGGAGCTGTAGGTTTCCATGAATCTCTGACTCATAGTTTGTTAACAGAGGAAGGTGTGGATGGGGTGAAAACCACCCTGATCTGCCCGTACATCGTCAACACTGGCATGTTTGCTGGATGCCAAATCAGGAAGGAACTCCAAGGCCTGATTCCACCTCTGGATCCTCTATACTGTGTTCAGGAGTCAATGAAAGCCATTCTGGCTGACCAGCAAATGGTCTGCATCCCCCGCGTAATGTACTTCGCTATCCTCTCGCGGGCGTTGCTCCCCTGGGATGCTAATGTAGCAACATATCGTTTCATGGGAGGCGACAAGTGCATGTATTCCTTCATTAAGACCAAACAACAGCAACAGGTTGTTAACGGTCATGTGAAATCCTCTTAACTATCCTGTAATAGCTCCACACATCATCCACATT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03629306_03634635.mRNA False 998 mRNA 0.39 5 3628926 3634635
TU279511 False 614 lncRNA 0.31 1 3628504 3629117
TU279526 True 513 lncRNA 0.47 4 3629272 3631866

Neighbor

gene id symbol gene type direction distance location
CI01000057_03428989_03429249 NA coding downstream 198552 3428672 ~ 3430374 (-)
CI01000057_03345268_03367172 NA coding downstream 260916 3344746 ~ 3368010 (-)
CI01000057_03192667_03213688 NA coding downstream 415057 3192502 ~ 3213869 (-)
CI01000057_03027103_03027612 NA coding downstream 601075 3027080 ~ 3027851 (-)
CI01000057_02844117_02844398 NA coding downstream 782188 2843791 ~ 2846738 (-)
CI01000057_03847471_03851892 GAMT coding upstream 212670 3847305 ~ 3852121 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 coding upstream 252568 3887203 ~ 3892054 (-)
CI01000057_03903266_03927695 ANO8, ANO8B coding upstream 267514 3902149 ~ 3927695 (-)
CI01000057_03964894_03967760 PLVAP coding upstream 329820 3964455 ~ 3968737 (-)
CI01000057_03995084_03999126 NA coding upstream 359255 3993890 ~ 3999163 (-)
G246298 NA non-coding downstream 12133 3616182 ~ 3616793 (-)
G246251 NA non-coding downstream 23069 3605618 ~ 3605857 (-)
G246250 NA non-coding downstream 24246 3604450 ~ 3604680 (-)
G245967 NA non-coding downstream 25730 3600603 ~ 3603196 (-)
G246248 NA non-coding downstream 33289 3595345 ~ 3595637 (-)
G246316 NA non-coding upstream 1323 3635958 ~ 3636175 (-)
G246297 NA non-coding upstream 2692 3637327 ~ 3661133 (-)
G246334 NA non-coding upstream 45049 3679684 ~ 3679883 (-)
G246338 NA non-coding upstream 47636 3682271 ~ 3682835 (-)
G246337 NA non-coding upstream 65079 3699714 ~ 3701384 (-)
CI01000057_01904867_01921400 NA other downstream 1707505 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 1823773 1801528 ~ 1806454 (-)
G244358 NA other downstream 3057898 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 1294109 4927533 ~ 4931420 (-)
G246780 NA other upstream 1576475 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 2288905 5923540 ~ 5927295 (-)

Expression


Co-expression Network