XLOC_010064 (rragca)


Basic Information

Item Value
gene id XLOC_010064
gene name rragca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33163858 ~ 33179119 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020007
CATAATAAGTTTGCTCACATCCTTTTAGCATAAGGAGGTTTTATGTTTGTTTACTCGGCGTTTATTTCATGTTGATTGGATTACTAATAATTGGGGAGGTTAAAATTTAACGGGGTTGGGGAGGGGGGTCAACATGTCGATCCAGTACGAGGCACCGCTGGCGGACAGCTACGGAGTGGCGGACTCGTTTCCCAAAGATTTCGGATATGGGGAAGAGGAGGGAGACATTGAGGACAGTCCTTCTCCCTCCGACAGTAAACCAAGAATCCTGCTAATGGGGTTGAGGAGGAGCGGGAAGTCCTCTATCCAGAAGGTGGTGTTTCATAAGATGTCGCCCAATGAGACCCTCTTCCTGGAAAGCACCAACAAGATCTATAAGGATGACATCTCCAGCAGTTCCTTTGTCAACTTCCAGATCTGGGACTTCCCGGGACAAGTGGACTTTTTTGATCCAACTTTTGATTACGAGATGATCTTCAGAGGAACTGGAGCTTTGATATTTGTCATCGACGCTCAGGATGACTATGTGGAGGCTCTTAGTCGACTCCACCTAACAGTATCGCGGGCCTACAGAGTGAACCCTGAGATCAACTTTGAAGTGTTCATCCATAAAGTAGATGGCCTGTCTGATGACCATAAGATCGAGACCCAGCGGGACATACATCAGAGGGCTAATGATGACCTGGCAGATGCAAGCTTAGAGAAACTACATCTCAGtTTCTATTTGACGAGTATATACGATCACTCTATCTTCGAGGCCTTCAGTAAAGTTGTCCAGAAGCTCATCCCTCAGCTTCCCACGCTGGAGAACCTTCTCAACATCTTTATATCTAATTCAGGGATCGAGAAGGCCTTCCTGTTTGACGTCGTCAGTAAGATTTACATTGCCACTGACAGTTCACCGGTGGACATGCAGTCCTATGAGCTCTGCTGTGACATGATCGATGTGGTCATTGACGTGTCCTGTATTTATGGATTAAAAGAGGACGGCAGTGGCAGTGCATATGATAAGGAATCTATGGCCATCATCAAACTCAACAACACCACAGTGCTCTACCTGAAAGAAGTCACCAAGTTCCTCGCTCTGGTCTGCATCCTGAGAGAAGAGAGCTTTGAGCGCAAAGGATTAATAGACTACAATTTCCACTGTTTCCGGAAAGCCATTCATGAGGTGTTCGAGGTGGGAGTTTCCACCTCAAGGACAAGCAACCAGCCAGTTGGCACCCCTCTTATGAAAACTGTTGCCTTAAATGGAACCCCAAGGAGCACTGTGTAGAGAGAAGGTGATAAAGACAATAATGAAAAGTGTGGAGAAGATGGATAAGGTAATAAAAGAGAAAGACTACAGGATGGGCCGCATTCTGAGTATGCTGACCATCATTAATGCTCCCAAAAGCTTTATAAGCAAAAGAGTCACTAAAACAAACATGCTGCAGTGTGTGGGGCAGAATTGTAATGTGGGTAAGCTTGCAAAGCCACGCATGTATGGAAGGGAAGAGGCACAAAAGAAGGTGGAACACTTTTTTTGTGACTAAAAGGCATTAACAAACTGTTCCTCAAGACAACATGTTAAACAAAAGTGCAAGTCACTGGGGGGAAAAGCACAGCAAGAAACCTCACCCTGTCAGGTTGAACCTCCTGACAACTTGGATGAATGCTGTATGATATGTTGCTGGTCACTTAACACAGTAGCCAAGTTTAAACTGGTTTACTCCTAAACACATGAATGTGGCAGACGTCTGTGAAAATTTTGCAGTGCACAACAATATTGAGTGTATACTTCTGAAGCCTTATGTAGAGTTGTCCTAATGCAAGCCCCTAATGCACATATGCACACTTGGTCACCCAAATGTTTTGTGTATGAAAGGGACTGAAATGTGATTTAATGTGTCTCGACTGTGGGAGCTAATGCATGTATGTGGTGGAAATGGTGGGTGGGTGTTGTGTATGCACACTGGCTTGGGGCCCAGAGATGTTGTGACATCTCACACAAGAATGAGGAGGAGTTGTGCTGTTCCAACTGACCTCTGGGACACTGTGATTGCACTTACCTCAGAGGATTTCAGGGATCCTAACTAACAcaatttaaactgcttttgctGTACTGTTGCCCTTCAGTTACGTTACAGCATCTTTGGAGGATAGATCATGCAATCCTAGCACTTTGTAGGATGAACCTTAATTACTTACATTCCGGTTCTGAGGTGCCAATGCAGTTTTGCTCGCATTAAAACTTTGTAATACTTGCTTTCACTTTTCCCGATCACCAATCAGCATGTTGTTTTTAATTCTGATGAAATCTGCtgtaaaataaagataataaa

Function

symbol description
rragca Predicted to enable GTPase activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; cellular response to starvation; and positive regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of Gtr1-Gtr2 GTPase complex. Predicted to be active in lysosome and nucleus. Orthologous to human RRAGC (Ras related GTP binding C).

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0010506 regulation of autophagy biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005764 lysosome cellular_component
GO:0034448 EGO complex cellular_component
GO:1990131 Gtr1-Gtr2 GTPase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-355 Predicted to enable GTPase activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; cellular response to starvation; and positive regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of Gtr1-Gtr2 GTPase complex. Predicted to be active in lysosome and nucleus. Orthologous to human RRAGC (Ras related GTP binding C).

Ensembl:

ensembl_id ENSDARG00000069829

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020007 True 2324 mRNA 0.44 7 33163858 33179119

Neighbor

gene id symbol gene type direction distance location
XLOC_010063 rhbdl2 coding upstream 9340 33142734 ~ 33154518 (+)
XLOC_010062 akirin1 coding upstream 21924 33121106 ~ 33141934 (+)
XLOC_010061 cnr2 coding upstream 44232 33109496 ~ 33119626 (+)
XLOC_010060 NA coding upstream 100699 33058899 ~ 33063159 (+)
XLOC_010059 prss35 coding upstream 159006 32995882 ~ 33004852 (+)
XLOC_010065 NA coding downstream 987 33180106 ~ 33214537 (+)
XLOC_010066 NA coding downstream 71371 33250490 ~ 33293780 (+)
XLOC_010067 AL954832.1 coding downstream 164032 33343151 ~ 33343265 (+)
XLOC_010068 pou3f1 coding downstream 413997 33593116 ~ 33595985 (+)
XLOC_010069 fhl3a coding downstream 476771 33655890 ~ 33736831 (+)
XLOC_010055 CR848729.4 non-coding upstream 490922 32672820 ~ 32672936 (+)
XLOC_010053 CR533571.1 non-coding upstream 654400 32397507 ~ 32509458 (+)
XLOC_010052 NA non-coding upstream 798287 32278999 ~ 32365571 (+)
XLOC_010047 NA non-coding upstream 1068174 32092712 ~ 32095684 (+)
XLOC_010070 BX530064.2 non-coding downstream 572983 33752102 ~ 33756379 (+)
XLOC_010080 NA non-coding downstream 1136643 34315762 ~ 34321379 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding CI01000027 null 10098712 ~ 10105308 (+)
bowfin (Amia calva) AMCG00010919 rragc,rragca,LOC107700741,LOC107716860,LOC107704952,LOC106605136,LOC107730935 coding CM030133.1 CM030133.1 4557553 ~ 4569654 (-)