XLOC_010065


Basic Information

Item Value
gene id XLOC_010065
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33180106 ~ 33214537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021974
TTTAATTTGCTACACGAATCTCAAACGTTGTCCAAATAAGTAAGTGTTCGTTGATCATTTTGAAGTTTAAGTTATAAATTTTACCGAAAATCTAAAGAGTCGAATCTTTTAAGTTCATTAGATCAATCTAGTTCACGCCTGCAGTTCAGACAACcgttttaaatgattcattgacGAAACATTCAACAGACACCAAATCCAGTCACGTCGGCTGCATTCTCTTTAAGTGGATTATCGATACGGTTGAGAGTGGAGGAAGATAAAAAAAAGATGCAGAGCAGAGTGAATGGATGGAGGTGCACAGTGAAGGAGAAAGAGAAGCACATTCAAGGAATAGTAAACTCTGCTCAGCTGTCAGCTTGGCACAGGCAGAAGAGCTCAATCAGAAGTGACTGCTGCTGTGTTCAGAAATGGATGGAAGTTGTTCAGGGTGAGGAGACCTGAGGATTGCTGAGATTGTCTGTCTTCTTGCGTTACAGGTGTTCATCCATTCTTCATCTCCAGAGAGTGAAGTTAGCAGAGCAGCGATGGAAAACAGAGAGAAGAGGAGGTGAGAAGTAAAGGCTGCAGCGAGAGTATGAGGACGAAAAAACAGAACAGACAGGCAAGTGTTTTATTGAATCTTTGGTGTCCACAGAATCGGGTAACTCACTTAGAGGGCGTCTCTAAAAGCATTCGGTGTGTGGAGCCCTATGGGCAGTGTCACTCTCAATCTACAAAACAGAGGACCGGAGGGGCTGCTCTTTGAATAAGAAAACTACTTTTACAATACAGATGGATTATTTCATCTCTGACTGGTCCCTCCTGAGACTTTTTTCAGCCGCATATTTTGGGGGAATGAAAAATAGggctgtgaatgtgtgtttggtcAAATCTGATATCAATATCACTTTAGAGAGATTATTTCCCCATAAATGCTTCTCAGAAGCTTTTCACTCTGCTTGGCTCATGGGGATAGAATTTGCCTCTAAATGAAATGCGATGGCTGAGAGCACCACTTGGGGTCTGGATTTCAGGAAGTATCAAATATGTAGATGCGAAAGGTGCTCAAAAATCGAAATAGGGTAAAAATGAAAATCTGATCTTCTAAAACAAATCATAGAACTTGATTGAAAACATTCAGAAAGTTTATGGGATAGTTTACCCATATGTAAAAAATCATAATCTCACTCTAATAAAATTCATTTTCATCATAGTTCAattgattattatcagttttttaTCAATTCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021974 True 1232 lncRNA 0.40 4 33180106 33214537

Neighbor

gene id symbol gene type direction distance location
XLOC_010064 rragca coding upstream 987 33163858 ~ 33179119 (+)
XLOC_010063 rhbdl2 coding upstream 25588 33142734 ~ 33154518 (+)
XLOC_010062 akirin1 coding upstream 38172 33121106 ~ 33141934 (+)
XLOC_010061 cnr2 coding upstream 60480 33109496 ~ 33119626 (+)
XLOC_010060 NA coding upstream 116947 33058899 ~ 33063159 (+)
XLOC_010066 NA coding downstream 35953 33250490 ~ 33293780 (+)
XLOC_010067 AL954832.1 coding downstream 128614 33343151 ~ 33343265 (+)
XLOC_010068 pou3f1 coding downstream 378579 33593116 ~ 33595985 (+)
XLOC_010069 fhl3a coding downstream 441353 33655890 ~ 33736831 (+)
XLOC_010070 BX530064.2 coding downstream 537565 33752102 ~ 33756379 (+)
XLOC_010055 CR848729.4 non-coding upstream 507170 32672820 ~ 32672936 (+)
XLOC_010053 CR533571.1 non-coding upstream 670648 32397507 ~ 32509458 (+)
XLOC_010052 NA non-coding upstream 814535 32278999 ~ 32365571 (+)
XLOC_010047 NA non-coding upstream 1084422 32092712 ~ 32095684 (+)
XLOC_010080 NA non-coding downstream 1101225 34315762 ~ 34321379 (+)
XLOC_010081 NA non-coding downstream 1105352 34319889 ~ 34323007 (+)

Expression


Co-expression Network