CI01000057_03964894_03967760 (PLVAP)


Basic Information

Item Value
gene id CI01000057_03964894_03967760
gene name PLVAP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3964455 ~ 3968737 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03964894_03967760.mRNA
AAAGACAAATGTCATCAGTATTCATCTGTCTTTTGCAGATTCAGCTTCCTGTTTTTGTCTTAAAGCTCATCTGCAATCTATAAGGGATTTTGTGAGAACTTTTAGTCTGTTTCAAAAACCCTCTGTAAATTACTTTCCGCTGAGGATGGATTGGCAAGGAGACAATGGCCTGCAGGAAAACCCCTGACTTACTTTATGTTCACTCTTCACACTCTCCCAGACACGGCTGTCAGCTGCGAGCGTCATCAGCAGCCCTGGATCAAACGTGCTGCCGCCTCCTGGGCTTCTGGGAGAGTTTGTTATTCATTCCTGCGCGGAGGATGACGGGTCACCATTGTTGTCCCTCCGACTCCACCGATGGTCTCTGCGGCTCTGCAGGAAACAGTTTCAGATGGGTTGTTTTGATCATGTGTTTATGAATCTGATCCGATCCAGGAAGAGATGGAAGGACCTGCTTTTGACCTTTGCAGGAACATTGTTTTTTTTGGCTGAAGTGGGCGATTTCAAAATGACACCTGATAAAAAATTCATTAACTCCTTATTAAATATTGAGAAATACCAATATGGATGCCAAGAACATCTACACACAAATCCCACAGTGAACTTATGAAATAAATGTTATCTAGATGTTTAATGGTGGTCTGCATTGCTAGTCAGGGTTTGGTGTGATTTATGAGGAAAAGTAAGGGAGGAGCCCTGGTTTGTTTCTCAATTGGATATCTCCATAGGTTCAGCGTGAAGTACCGATAACCTCTGGAGCTTTCCTGGGGAGGACCCGGAAAGAGTCACGGCGCGGGAAGTGTGTCTGCGCATTTATAAACACAGCTACCGCCCTGTGTCCTGGTAGAAGTGTTTACATGTCTTTGCCCACAAGTGTGACAGCACTGCAGGGTATTTTGGTAACCTTTTGACCATTGCTTTTTCTCAAGAATCAGTCTTCAGAAGGTTCATCTCTTTTCCATAACTGGACTGCAGAAATGTACAACAACAGCTACTCCCGGGCCACATTAGGGCTGGAGGCGAAACATATCCACAAGGCGAAGGGGAAAAGCTGCGGCTACTACATGAGGATTGTGTTCTTCTTTTCGTCTCTGATCCAGTCCCTCATCATCGCCAGTTTGGTGCTCTTCCTTGTGTACGGCCAGCCAGAGAAGACTGCCGAGGAGAAGAGAGTAGAAGAGCTGGAGCAGGCCTATAACAAGCTCTCCACAGACAACACCAAACTCCGAAAAGAGAAAGCTGACCTCACCGGTGCCCTCAAAGCAAAGACTGGAGAGAAGGATGCGGCAGACAAAGAGATAGCAAAGCTGAAAAATGACTTAAACACAACAAGTTTCAATAGCAAAAACTTTCAGAAGTCACTTTCTCTTTGTGAGCTCAATAAAATGAAGCTTACAAGCACTAGGAATACTCCAATACCATGTCCACCGAGCAACAACAATCAAAATGGTGAAATAAAATCTCTGACTACTCTTCTGGATCAGCAGAAAGTTCTGTATGGTATCCTTAAGAGTAACTTCAGCATGACAGTGGAGTACCTTAAAGCTGACTTGGACAACGCAGTGAAGGATAAAAACGAGCATCATGCCCAGGTGATACAACTGAGACAAGAAAACATGAATTTGAAATCCCAGCTTGAAGTTTACACCAAGAAATGCAAAGAAGACTTTGCCGACTCCCTCCAAGGCATCCAGACGGTCACAAGTGCCTTCCTAACTAAAATTGACAACTTCTTCACCAACTCGGTCACGTTTCACCTCACCTGCCCGAAACAGGAAGAACAGATGAACAGGATTCGCTCCAACTGCTCCAGCCTTTCTCGGCAAGTGGAGGACAAGTTTCAGAGCTACCTGAACACTGTGGGAGAGAAAGTCTCGAACATTCAAAAAAAGAGCAGCTTGTTGGAAGTACAGAATTCGGGGCTGACTTCGGAACTGGACAAGTGCAAAACAGGTCGAGAGAAAGACGCTGCAGAGAGCAGCAAAAAACTGCAGGATGCCCAACAGACGTATGACAGACAACTGGAGCAGCTTCTCAGGGAGCAAAGCAGACTGAGGGATGCCAAAGATCTGCTAGACGCCCAGCTTGCTGTGAAGGACGCCACCCTCATATCTCTGCAAAACGGCTGCGTACAACAGGTTGGGTGTGGAGAAGGGAATGATCTGAATCTCAAGGTCGGACTTTGAGTTTTTGAGCGTCTTGTATGTGGGAGTTTCCTCATTTTGAGCCTGTGATCTCTTTTGTAAATAATGTTGTCACTGTGGATCACTGTAAATGTACATGCACTCTAATGTTTAGCTCACTGTATAGTTGTATTTAAGCGTTATGAGCTATGAACATTACATGAAGTACTTTAGGGGTTTGATTTAGTTGTTTAGAGTAATGCAGACATAAAAATGTGAGTAAATACAAGACTGCCTTCATCAGTATCATCAGTTAATGTTAAAATTAAGAGAATCTGATTCTGTGAAACCTCCACGTGCTGTGATGTATATAATATTCTTTACACATTAAGAATTGTGTTTCAGCAATTACTTCTTTCAACCATTTGCAGGTTTCAATGACCTTTTTCTGATTTTTTTTTTCTAAATAATGTCCTTGTTAATATATATCTGTTTTAATAAA

Function

symbol description
plvap Predicted to enable identical protein binding activity. Involved in MAPK cascade; positive regulation of cellular extravasation; and tumor necrosis factor-mediated signaling pathway. Located in cell surface. Colocalizes with caveola. Implicated in congenital diarrhea.

NR:

description
Zgc:136228

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03964894_03967760.mRNA True 2625 mRNA 0.43 4 3964455 3968737

Neighbor

gene id symbol gene type direction distance location
CI01000057_03903266_03927695 ANO8, ANO8B coding downstream 36760 3902149 ~ 3927695 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 coding downstream 72401 3887203 ~ 3892054 (-)
CI01000057_03847471_03851892 GAMT coding downstream 112334 3847305 ~ 3852121 (-)
CI01000057_03629306_03634635 NA coding downstream 329820 3628504 ~ 3634635 (-)
CI01000057_03428989_03429249 NA coding downstream 534081 3428672 ~ 3430374 (-)
CI01000057_03995084_03999126 NA coding upstream 25153 3993890 ~ 3999163 (-)
CI01000057_04042903_04046286 CCL44 coding upstream 74033 4042770 ~ 4046320 (-)
CI01000057_04055321_04058726 POLE4 coding upstream 86554 4055291 ~ 4059069 (-)
CI01000057_04145896_04146600 NRTN coding upstream 176527 4145264 ~ 4146790 (-)
CI01000057_04195849_04198909 NDUFA11 coding upstream 227058 4195795 ~ 4198909 (-)
G246278 NA non-coding downstream 148112 3815644 ~ 3816343 (-)
G246295 NA non-coding downstream 148895 3814101 ~ 3815560 (-)
G246363 NA non-coding downstream 199753 3764262 ~ 3764702 (-)
G246342 NA non-coding downstream 239731 3719901 ~ 3724724 (-)
G246407 NA non-coding upstream 22824 3991561 ~ 3991876 (-)
G246429 NA non-coding upstream 92886 4061623 ~ 4140129 (-)
G246279 NA non-coding upstream 226287 4195024 ~ 4195559 (-)
G246281 NA non-coding upstream 239226 4207963 ~ 4208933 (-)
G246474 NA non-coding upstream 240620 4209357 ~ 4209730 (-)
CI01000057_01904867_01921400 NA other downstream 2043034 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2159302 1801528 ~ 1806454 (-)
G244358 NA other downstream 3393427 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 960007 4927533 ~ 4931420 (-)
G246780 NA other upstream 1242373 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1954803 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location