CI01000057_04210090_04214161


Basic Information

Item Value
gene id CI01000057_04210090_04214161
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4209916 ~ 4214161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04210090_04214161.mRNA
ATGTCCTCACCCGGTTTTACTGACATCTTCCATTGTGAAGACACTCAGCAATCAAAGGGGCTGTTCTCATACACTGATGATGGGCTAAATGATAGTTTGGACGGGAGTTCAACTGAATTGACTGATGTTTTTGAAGAGGAGTTCTGTGAGGGTGAACTCTGGATTCCTCCAAATGATGATTTGACACAAAAAATTGCCGCCCAGCTCGAGAACTACCTTTCTGATGAAAATCTATCAGATGATGCTTTTCTGCTTAAACATGTCCAAAGAAACAAGATGGGTTATGTTAGTTTGAAGCTGCTGACATCTTTCAAAAAGATTAGAGATCTCACGCGAGACTGGCGCACCACCCTGGCGGCTGCAAGAACCTCTCCACTGCTGGAAGTGAATGAGATTGGTACCAAGGTGCGACGAAGGACTCCAGTGCCCGACTGGCTCCTGTGCATTCCCACAAGCAAGCTGCTTCTGGCCTGGAACTTCCTGGATGGCGTTGGCCCAGTCAAGGATGAGTTAAATGGGTCACCGGGTGGGGAGCAACTAGGCATCATGGAAGCCGCAATGCGGGTGTTTTCCCCCTATGGCACCATTTCTTCTCTCCGCATTCTGCGGCCAGGAAAAGAGATCCCTGCAGAGCTGAAACGCTATACTAAGAAACACCTCGAACTGGGGCGCAAAGTGTGTGCTGTGGTGGAGTACGAGTATCTTGAGGGCGCGCGCAAAGCCTACGAGGCCCTGAAGGCAGAAGAGCAGGGAGGAAGGGGCATTTGTGTGGTCCTGCTGGGTAGCCGTGGAACTCGTAAGCCAGGATGGAGCCAAAACCTAGTGGAGGAAGAGTCAGAAGAAGGTATTGACAATGACAGTTTAAAAAAGCCTAACAGAAAAGCCAGGCGGTACATTTATTCTTTGGAGGATTCGGCTGTTTGCAGCTCTTCAGAGTCTGATTTTGCCCCTGCCTCACCCCGGCCCAATCGCAGAGTCTCCCGCCCACAGGCCCTCTACGGCAGTCCCCTCGCCATCCCGCGGATATCGACTTTCCGCTCTGACCCTTACAGGAATCCTCTGTGCAGTCCCGTTGGAAGCCCCCTCCTGCCTCGCAAGCTTTTTCCTTGCAGTCATGTGACCTCTCCTCTGGCTACGCATCCTCTCAGCAGCACTCCCACTGCAGCTGGTACATCCTCCTTCAGCAGGTACAAGGGCTCGGATGAGCTCTCCCCAGATGACTTGGGGTTCACGAGCAGCCCGTGGGTCCAGAGACGTAAAAATGCCGCCCAGGTCATTCAGCCTGAGATGGGTAGCTTGTTGACGCCCAGTCAGATTGTGAGGTCTTTGAGTGTCCTGGTTGTGCGTCAGCCTGTCGGACCTGATGGGACCAAGGGTTTTCACAACTGCATTGGCAGAGGGAAGGTGCTGCTACCCCACTGACCCTGTCAAAGATGCATTATAAAGTCTTTTTCTCTGTATGTGAGAACCGTATTCTGCAGTGCAACAGAAGCACTTTTAATGCAACATAATTACTGACATGTTGATTGCTCCTATTAATGAAATTAGGGGGGAAAATGTAATGTAAAAAAAGTGTTTAATTAAATATTGAATAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04210090_04214161.mRNA True 1596 mRNA 0.50 3 4209916 4214161

Neighbor

gene id symbol gene type direction distance location
CI01000057_04195849_04198909 NDUFA11 coding downstream 11007 4195795 ~ 4198909 (-)
CI01000057_04145896_04146600 NRTN coding downstream 63126 4145264 ~ 4146790 (-)
CI01000057_04055321_04058726 POLE4 coding downstream 150847 4055291 ~ 4059069 (-)
CI01000057_04042903_04046286 CCL44 coding downstream 163596 4042770 ~ 4046320 (-)
CI01000057_03995084_03999126 NA coding downstream 210753 3993890 ~ 3999163 (-)
CI01000057_04455612_04467173 DDX49, DDX49.S coding upstream 240873 4455034 ~ 4467217 (-)
CI01000057_04467496_04467864 NA coding upstream 253312 4467473 ~ 4468001 (-)
CI01000057_04512368_04525620 COMP coding upstream 297716 4511877 ~ 4525620 (-)
CI01000057_04543887_04545600 NA coding upstream 328710 4542871 ~ 4546001 (-)
CI01000057_04560576_04573644 NA coding upstream 345479 4559640 ~ 4573644 (-)
G246474 NA non-coding downstream 186 4209357 ~ 4209730 (-)
G246281 NA non-coding downstream 983 4207963 ~ 4208933 (-)
G246279 NA non-coding downstream 14357 4195024 ~ 4195559 (-)
G246429 NA non-coding downstream 69787 4061623 ~ 4140129 (-)
G246407 NA non-coding downstream 218040 3991561 ~ 3991876 (-)
G246488 NA non-coding upstream 33363 4247524 ~ 4247797 (-)
G246497 NA non-coding upstream 47713 4261874 ~ 4262549 (-)
G246292 NA non-coding upstream 63238 4277399 ~ 4278950 (-)
G246289 NA non-coding upstream 66417 4280578 ~ 4283109 (-)
G246519 NA non-coding upstream 130049 4344210 ~ 4345741 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 312225 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2288495 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2404763 1801528 ~ 1806454 (-)
G244358 NA other downstream 3638888 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 714583 4927533 ~ 4931420 (-)
G246780 NA other upstream 996949 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1709379 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location