CI01000057_04512368_04525620 (COMP)


Basic Information

Item Value
gene id CI01000057_04512368_04525620
gene name COMP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4511877 ~ 4525620 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04512368_04525620.mRNA
TAATTCTACATGGTTTACTACAGATGGAGAGATTATCAAACAGATTAAAGGCACAAACCAGGAGCTTGCTGAAATCAAAGAACTACTGAAGCAACAGATACAGGAAATTGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGTGGCATGAGACCAGTAGATCCACAGCCTTTATGTGATCCGAACCCCTGCCACGCTGGTGTGGAATGCATTATGACACCCAGTGGCATCAAGTGTGGCCCATGCCCGGTGGGCATGACAGGAAATGGAACTCACTGTACTGATGTTGATGAGTGTGCTGTAATGCCATGTCACATGGGGGTGAGATGCATTAACACATCACCTGGTTTTCGCTGTGGCCCCTGTCCAGCTGGGTACATTGGCCCCCAGGTGCAGGGGGTCGGACTTGCCTATGCATCTGCCAATAAGCAGGTCTGCACAGACAATAATGAGTGTGAAAACTCAAATGGAGGCTGCGTGGAGAACTCCAACTGCATCAACACACCAGGCTCTTTTCGTTGTGGTAGCTGTAAGACTGGTTTTGTTGGGGATCAGGCGAAAGGCTGCAAACCTGAGCGGGCTTGTGGTAATGGTCAGCCCAATCCTTGCCATGCCAGCGCAGAATGCATTGTTCACCGTGATGGACAGATTGAATGTGCATGTGGAGTTGGGTGGGCTGGGAATGGATACTTCTGTGGAATAGACACTGATATTGATGGCTTTCCTGATGAAAATTTGGAATGTGCGGAAAGAAACTGTGCAAAGGACAATTGCCTCACTGTTCCAAACTCCGGCCAAGAAGATGCAGACAAAGATAACATCGGTGATGCATGTGATGATGATGCAGATGGAGATGGGATCCTAAACACAGAGATTTGCTTTCCAGGAATAAAAAATGATGAGGATAACTGCAAAAAGGTGCCAAACCGTGACCAGAAAGATAGAGATGGTGATAATGTTGGTGACGCTTGTGACAGCTGTCCCTATGTCCGCAACCCTGATCAGACGGATGTGGATAATGATTTAATTGGCGATCCTTGTGACACCAACAAAGACAGTGATGGAGATGGACATCAGGACACTCGAGACAACTGTCCTGCAGTTATCAACAGCTCCCAGCTAGACACAGACAAGGATGGCATTGGAGATGAATGTGATGATGATGATGACAACGATGGCATTCCTGATCTCCTTCCACCTGGTCCAGACAACTGTCGTCTGATTCCAAACCCACTGCAGGAGGACTTTGATGGTGATGGGATTGGCAACGTTTGTGAGAATGACTTTGACAATGACACATATAGCGACAGCATTGACGTTTGTCCTGAGAATGCTGAGGTCACTCTCACCGACTTCAGAACCTATCAGACTGTAGTTCTAGATCCAGAGGGTGATGCGCAAATCGATCCAAACTGGGTGGTGCTTAATCAGGGAAGAGAGATTGTTCAGACCATGAACAGTGACCCTGGACTCGCTGTAGGCTACACAGCATTTAATGGTGTGGACTTCGAAGGGACGTTTCATGTGAATACTGAGACAGATGATGACTATGCAGGCTTTATCTTTGGCTATCAGGACAGCTCGAGCTTCTACGTGGTAATGTGGAAGCAAATCGAGCAGATTTACTGGCAAGCCAACCCTTTCCGAGCTGTAGCTGAGCCTGGTATCCAACTAAAGGCAGTGAAATCAGACACAGGGCCTGGAGAGAACTTGCGGAATTCACTCTGGCACACAGGTGACTCAACTAACCAGGTGAAACTCTTGTGGAAAGATTCCAGGAATGTTGGCTGGAAAGACAAGACTTCTTATCGCTGGTTCCTGCAGCACAGACCCCAAGAAGGATATATTAGGGTTCGGTTCTATGAAGGTCAGCAGATGGTGGCAGACACAGGAATTATTATTGACACAACCATGAGAGGAGGCAGACTGGGAGTTTTCTGCTTCTCCCAGGAGAACATCATCTGGGCCAATCTGCGCTACAGATGCAACGATACAATCCCAGAGGACTTTGAGACATTCAGAGCCCAGCAAATCCAGCTTTTTTAGACCCAAACTCAACATCAGAGTTCTTTTTTACAAGGTTAATGTGTGTTTGAGTTGTATATTTCTGTCATGTGTGTTATATTTTATACTCAATTTTTTATACTTTATGAACAGTAGACAAGCCTTCTTGATGACTCTGATTAGCACTGAGGTCACAAACACCAGAATTTAAATATATATATGTATTTTAAAAACACGTACAGAAATACAGGTTACAAAATATAAATGATATAACAAGAAGGCTCTGATATATGCAGCTGAGACATCATGCACATCCATATTTAGCATTTTTTTTTTTTTCTGAGAAAGGAAAAGGACCAGCAAACGACAAAGACGAAATCAGTTCCTTCTACAATCAGTTACCACAAATAGGAGACAAAGATGACCACACCAGCACAGCGACTATAGAAATGGGCATCTGGATAGATCCAACCCAATGAAAGCTCTAGACAACCACAAATTATATGTCCTAATATACCGTTAATTCCAATAAA

Function

symbol description
comp Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04512368_04525620.mRNA True 2541 mRNA 0.45 17 4511877 4525620

Neighbor

gene id symbol gene type direction distance location
CI01000057_04467496_04467864 NA coding downstream 43876 4467473 ~ 4468001 (-)
CI01000057_04455612_04467173 DDX49, DDX49.S coding downstream 44660 4455034 ~ 4467217 (-)
CI01000057_04210090_04214161 NA coding downstream 297716 4209916 ~ 4214161 (-)
CI01000057_04195849_04198909 NDUFA11 coding downstream 312968 4195795 ~ 4198909 (-)
CI01000057_04145896_04146600 NRTN coding downstream 365087 4145264 ~ 4146790 (-)
CI01000057_04543887_04545600 NA coding upstream 17251 4542871 ~ 4546001 (-)
CI01000057_04560576_04573644 NA coding upstream 34020 4559640 ~ 4573644 (-)
CI01000057_04583096_04590861 ISY1 coding upstream 57291 4582911 ~ 4590861 (-)
CI01000057_04597494_04597814 NA coding upstream 71795 4597415 ~ 4597814 (-)
CI01000057_04635274_04644405 NA coding upstream 109597 4635217 ~ 4644405 (-)
G246611 NA non-coding downstream 14208 4487312 ~ 4497669 (-)
G246617 NA non-coding downstream 15419 4495587 ~ 4496458 (-)
G246609 NA non-coding downstream 26695 4484909 ~ 4485182 (-)
G246588 NA non-coding downstream 51613 4450002 ~ 4460264 (-)
G246595 NA non-coding downstream 68063 4434813 ~ 4443814 (-)
G246597 NA non-coding upstream 7176 4532796 ~ 4534368 (-)
G246603 NA non-coding upstream 31106 4556726 ~ 4557010 (-)
G246587 NA non-coding upstream 31491 4557111 ~ 4559437 (-)
G246632 NA non-coding upstream 72332 4597952 ~ 4598294 (-)
G246600 NA non-coding upstream 129357 4654977 ~ 4655439 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 614186 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2590456 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2706724 1801528 ~ 1806454 (-)
G244358 NA other downstream 3940849 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 403124 4927533 ~ 4931420 (-)
G246780 NA other upstream 685490 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1397920 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006116 comp coding CM030142.1 CM030142.1 16001553 ~ 16012344 (-)