CI01000057_04560576_04573644


Basic Information

Item Value
gene id CI01000057_04560576_04573644
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4559640 ~ 4573644 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04560576_04573644.mRNA
CTGGAGCCGAGCTTTGGGTTGTTGTTCGACATCGATGGAGTCTTGGTGCGAGGGAAGACCCCCATCCCAGCGGCCAAGAGAGCTTTCCAGAAGCTGGTGGACGCAAAGGGACAGTTCGTGGTTCCGGTTGTCTTTGTCACAAATGCTGGCAACTGCTTGCGGCAGAAGAAGGCAGATCAGCTGTCTCACATACTGGGTGTTCCTAGGTGTGAAAGAAAATTACATAAACCTATCAATGGCTCCTACGCAAACGATCTACAGATCTCTCAAGACCAAGTCATGATGTCTCACAGCCCTTTGAGAATGTTCAAGAAATATCATGACAAGTATGTGCTGGTATCTGGACAAGGTCCTGTGCTCGACATTGCCAAAAACGTGGGCTTCACAAACGTGGTCAGTATCGACATGCTGCGGGAGTCGTTCCCTCTGCTGGACATGGTGGATCACAACAGACGACCCAAACTACCGTCTTCTCCTGTGGTGAACCTCCCCAGAGTCGAAGCTGTAGTTCTGTTCGGGGAGCCCATTCGATGGGAAACAAACCTACAGCTCATCGTTGACGTCCTTCTCACCAATGGGAACCTGAGCAATGCCTACGAGAGCCATCACAACGCTCACCTGCCACTGCTGGCCTGTAACATGGACCTGATGTGGATGGCAGAGGCTCATTCACCGAGATTCGGTCACGGCACTTTCATGGTATGTTTGGAGAGCATCTATAAGAAGATCACTGGCCAAGATCTGAAGTACGAGGCCCTCATGGGGAAGCCCAGTGAACTGACGTACCATTTTGCGGAGTACCTCATCAGAGAACAAGCTGCAGAGAGAGGCTGGAGGCAACCAATCAGATCCCTGTATGCTGTCGGGGACAACCTGATGACTGACATTTATGGTGCCAACCTCTACAATCGCTACCTCGAGGACCGGCTGGCCAGGAAGACCCGAGCAGTGGCGAATATGGTGACCGGAACAGGGACGCCCACCACCGTCCCTCAGGAGGAGGACATGGACAACGATTGGGAAAGTGAGCTCGCGTCGCCCTCCGCCACGTCCTGCAAGTCCATCCTGGTCTGCACAGGCGTCTACAACCCCCACATGGAGTTACCTAAAGATGCCAACCAGTGCATCAAAGAGACGGTCTTCCACGGGCACCGCGACTTCCGCTTCGACCCCGCTCTAGTCGAGCCGGAGAAAATCGTACAGGATGTGGATGCTGCTGTGGAACTCATCTTTGAGATGGAGAAGTTCGGGACGGCCGTTTAGTTACATCGATGTGATATCAAGAGTCTATATCGTTCAGCCTTTCCATTTTAGTATATGTTTTATGGAGAAACCCTCCACAAATAAGCACAACTGAGAAAACGGCAGCAATTATCTAAGATCTCATGGCATTTTAGTGTCACTGGGCAACATGATTTCCTTTTAACTGTAACGTGTTTGTGTCCCAGCAGTATTTCGTCTGAACAGATTCATGAAACGCACAGCTATAGACCGACGCCAGATGAATATTGTAAGTGTGAAGTTGTTTCAGAAGCACGATGTGGATCGAATCTGTGATCTTCTGGATTCTACACTTCTGCATCCCCAGATTGCAAGGTATGGAAGCTTGTTTCTGCCATGCAATAAAAAAAATTAAAAAGTCGATTGTGACTTTTTATCTCATAATTCTGAGAAAAAAGACAGAATTGTGAGATAAAAACCCACAATTACCTTTATTTTTATTCTGTGGTGTAAACAAGCTTCCATAGCAAGGGCTATCAGTCTGCCTGGTGTTATTTGTTTAAATAATAGACTACATTAGTACTTCTATCATTTCTCACAGTTCAGCATTGGTAAAATCATATTACAGTAACTCACTGTACTGTTTTATCATTATATGTACCAAAAATATGGTCTACCATTTTTGTAGAATTGTATGTGTAATGTTTCGTATTAATTCAACATGTTCCATATTGTTATCTCCATTGTGCCAGTTTTAGTAATTGTTACAAACTCCATTCTTTTTATATATGTTTGATTTGGTAAATGTTACATTGTAACATTCTGGTGAGATTTGCACTGAGACTTGTAGAAATGAAAAGCCATTTACTTGAATGTTTGTTTTTGAATTTTACCGGGAAAATAGTGCAAAGGTTTGCACCTCCAATATAGAGTTCAACTGTTCAAAACTAATATGATACTTTCTGGTAGTACAATAAA

Function

GO:

id name namespace
GO:0046474 glycerophospholipid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04560576_04573644.mRNA True 2199 mRNA 0.45 8 4559640 4573644

Neighbor

gene id symbol gene type direction distance location
CI01000057_04543887_04545600 NA coding downstream 13639 4542871 ~ 4546001 (-)
CI01000057_04512368_04525620 COMP coding downstream 34020 4511877 ~ 4525620 (-)
CI01000057_04467496_04467864 NA coding downstream 91639 4467473 ~ 4468001 (-)
CI01000057_04455612_04467173 DDX49, DDX49.S coding downstream 92423 4455034 ~ 4467217 (-)
CI01000057_04210090_04214161 NA coding downstream 345479 4209916 ~ 4214161 (-)
CI01000057_04583096_04590861 ISY1 coding upstream 9267 4582911 ~ 4590861 (-)
CI01000057_04597494_04597814 NA coding upstream 23771 4597415 ~ 4597814 (-)
CI01000057_04635274_04644405 NA coding upstream 61573 4635217 ~ 4644405 (-)
CI01000057_04647822_04649004 NPFFL coding upstream 74129 4647773 ~ 4649004 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding upstream 83618 4657262 ~ 4663499 (-)
G246587 NA non-coding downstream 203 4557111 ~ 4559437 (-)
G246603 NA non-coding downstream 2630 4556726 ~ 4557010 (-)
G246597 NA non-coding downstream 25272 4532796 ~ 4534368 (-)
G246611 NA non-coding downstream 61971 4487312 ~ 4497669 (-)
G246617 NA non-coding downstream 63182 4495587 ~ 4496458 (-)
G246632 NA non-coding upstream 24308 4597952 ~ 4598294 (-)
G246600 NA non-coding upstream 81333 4654977 ~ 4655439 (-)
G246658 NA non-coding upstream 140447 4714091 ~ 4714359 (-)
G246662 NA non-coding upstream 150872 4724516 ~ 4725178 (-)
G246669 NA non-coding upstream 176171 4749815 ~ 4750141 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 661949 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2638219 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2754487 1801528 ~ 1806454 (-)
G244358 NA other downstream 3988612 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 355100 4927533 ~ 4931420 (-)
G246780 NA other upstream 637466 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1349896 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003792 zgc:77375 coding NC_007122.7 CM002895.2 457423 ~ 472547 (-)