CI01000057_04583096_04590861 (ISY1)


Basic Information

Item Value
gene id CI01000057_04583096_04590861
gene name ISY1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4582911 ~ 4590861 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04583096_04590861.mRNA
GCTCGAAATGCAGAAAAGGCCATGACGGCGTTGGCCAGGTTTCGTCAGGCTCAGCTTGAGGAAGGAAAGGTGAAGATCATCAGTGAGATTTCCAAGAAGGTCGCCCAGATTCAAAATGCTGGTCTGGGTGAATTTAAGATTCGTGATCTGAACGATGAAATCAACAAACTGCTCCGAGAGAAAGGACACTGGGAAGTGCGGATCAAGGAGCTTGGAGGGCCGGACTATCGGAGAGTGGGGCCAAAGATGTTGGACCATGAGGGTAAAGAGGTTCCAGGAAACAGAGGATACAAGTATTTCGGTGCCGCAAAAGACTTACCTGGAGTCAGAGAGCTGTTTGAAACAGAGCCTGTACCGCCACCCAGAAAAACACGAGCTGAGCTGATGAAGGACGTAGATGCTGAGTATTATGGATATAGAGATGAAGACGATGGTGTTTTAGTGCCTTTGGAACAGGAATATGAGAAACAAGTCATAGCAGAGGCTGTTGAGAAATGGAAAGCAGACAAAGAGGCTCGATTAGCTGCTGGTGTAGGCGTGAAAGACCCGGAAGAGGAGGAGGAACACATTTACGCTGTCAGAGATGAAGAGTCTGATGATGAAGCGGGAGAGCAGATGGAGGGAGAAGATGGTGCGCAGTCATTTTTCGCTCATGTTCCTGTTCCCTCGCAGAAGGAGATTGAGGAAGCCCTGGTCAGAAGGAAGAAGATGGAGCTGCTGCAGAAATACGCCAGTGAGAGTTTGATGGCGCAAAGCGAAGAGGCCAAAACGCTACTTGGATTATAGTCGGATCAGTTGGGTTGAAATGGGTTCATGAACAATCTTCAGCAGTCACGCATCTTAATGTGAGCGTTGAGACCAGAGCAGTGTCATTAGATGACAACTGACACTGACCATTATTTGATCACATCTGCTTTATGTGAAACAGATGTGCTTGAAGATGCTTAAGTTTTGGTTATGGATCTTATAAA

Function

symbol description
isy1 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough).

GO:

id name namespace
GO:0000384 first spliceosomal transesterification activity molecular_function

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04583096_04590861.mRNA True 971 mRNA 0.47 9 4582911 4590861

Neighbor

gene id symbol gene type direction distance location
CI01000057_04560576_04573644 NA coding downstream 9267 4559640 ~ 4573644 (-)
CI01000057_04543887_04545600 NA coding downstream 36910 4542871 ~ 4546001 (-)
CI01000057_04512368_04525620 COMP coding downstream 57291 4511877 ~ 4525620 (-)
CI01000057_04467496_04467864 NA coding downstream 114910 4467473 ~ 4468001 (-)
CI01000057_04455612_04467173 DDX49, DDX49.S coding downstream 115694 4455034 ~ 4467217 (-)
CI01000057_04597494_04597814 NA coding upstream 6554 4597415 ~ 4597814 (-)
CI01000057_04635274_04644405 NA coding upstream 44356 4635217 ~ 4644405 (-)
CI01000057_04647822_04649004 NPFFL coding upstream 56912 4647773 ~ 4649004 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding upstream 66401 4657262 ~ 4663499 (-)
CI01000057_04718947_04721031 NA coding upstream 128057 4718918 ~ 4721076 (-)
G246587 NA non-coding downstream 23474 4557111 ~ 4559437 (-)
G246603 NA non-coding downstream 25901 4556726 ~ 4557010 (-)
G246597 NA non-coding downstream 48543 4532796 ~ 4534368 (-)
G246611 NA non-coding downstream 85242 4487312 ~ 4497669 (-)
G246632 NA non-coding upstream 7091 4597952 ~ 4598294 (-)
G246600 NA non-coding upstream 64116 4654977 ~ 4655439 (-)
G246658 NA non-coding upstream 123230 4714091 ~ 4714359 (-)
G246662 NA non-coding upstream 133655 4724516 ~ 4725178 (-)
G246669 NA non-coding upstream 158954 4749815 ~ 4750141 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 685220 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2661490 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2777758 1801528 ~ 1806454 (-)
G244358 NA other downstream 4011883 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 337883 4927533 ~ 4931420 (-)
G246780 NA other upstream 620249 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1332679 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G189262 isy1,LOC108431508,LOC108254962,LOC107700632 non-coding NC_035918.1 CM008321.1 12973966 ~ 12980800 (+)