CI01000057_04635274_04644405


Basic Information

Item Value
gene id CI01000057_04635274_04644405
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4635217 ~ 4644405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04635274_04644405.mRNA
GTTGCACAAAACCGTGGAGACAGTAGCATTCACAGTAAAATATTACATTCGTTGCCGGATTGTAATCATGTCAACGAAACAAGTGACCTGCAGATATTTCCTCCATGGTGTGTGTCGGGAGGGCAGCAGATATGATCATGTCAAACCGTGCGGCCGTGGCGGAGGAGGAGGCGCAGCAGTCGAGCACACGAACAGAGCGGTGTCAGCGCCGGGACCCGCACCACCAGCAAACACTGCCAAAGCTGTCAAAAAACCACTCGTGCTGAGAGACAAAGCTCTGGGCTCTGACAGCAGAGGACGGCCGTACAGTGGCGAGAGGGCAGAGGACTGCTGGGACTACAGGGACGACCGCGCTCACGCCAATCCGCACACGTACCTGGACGCCATCCGCTCCGGGCTGGAGAGTTCGGCCACCGCCGGCCCGTATCCAGACACAAGCCCGCAGCCGCAGCTCTGCCCGTACATGGCGGCAGGACAGTGTCACTTTGGCGACAGCTGCTCGTATCTCCACGGCGATATGTGTGAAATATGTCGGCTGCAGGTTTTGCACCCGCACGACCCCGAGCAAAGAGCAGCGCATGAAAAGATGTGCATGGCGGCCTTTGAGATGGACATGGAGAGGGCGTTTGCGGTGCAGCAGAGTCAGGACAAGCAGTGCAAGATCTGTCTGGATGTGGTGTACGAGAAAGCGTCTCCGTCCGAGCGGCGCTTCGGCATCCTGTCCAGCTGCTGCCACACGTACTGCCTGAGCTGCATCCGCCAGTGGCGCTGCGTCGAGCAGTTCCAGAACCAGATCCGAAAGTCTTGTCCCGAGTGCCGTGTGGTGTCGGAGTTTGTCATTCCCAGCATGTACTGGGTGGAAGACCAGGATGAGAAGAATCGCCTCATTGAGGAGTTCAAATCTGGAGTCAGTAAGAAGCCCTGTAAATACTTTGATCAGGGAAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCATGCATACGCTGACGGGACACGAGCAGAACCCGACAAACCCCGCAAACAGCTCAGCGCAGAGGGGAACGTCCGGTTTCTTAATTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCATCGCGGGCTGCCGCAGTACGAGGACGAGGTCAATGAACTTGGCGAACTCTTCATGCAACTGTCAGGAGCCGGAGACGAGAGCGGCACGTCAGCGTCCCATTGATCACATGACACTCCTTCGTCTCATCTTAGGTACTGGGTGAAACGTCTGGCCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04635274_04644405.mRNA True 1264 mRNA 0.57 8 4635217 4644405

Neighbor

gene id symbol gene type direction distance location
CI01000057_04597494_04597814 NA coding downstream 37403 4597415 ~ 4597814 (-)
CI01000057_04583096_04590861 ISY1 coding downstream 44356 4582911 ~ 4590861 (-)
CI01000057_04560576_04573644 NA coding downstream 61573 4559640 ~ 4573644 (-)
CI01000057_04543887_04545600 NA coding downstream 89216 4542871 ~ 4546001 (-)
CI01000057_04512368_04525620 COMP coding downstream 109597 4511877 ~ 4525620 (-)
CI01000057_04647822_04649004 NPFFL coding upstream 3368 4647773 ~ 4649004 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding upstream 12857 4657262 ~ 4663499 (-)
CI01000057_04718947_04721031 NA coding upstream 74513 4718918 ~ 4721076 (-)
CI01000057_04728914_04731946 NA coding upstream 84467 4728872 ~ 4733723 (-)
CI01000057_04743808_04746558 NA coding upstream 99001 4743406 ~ 4748097 (-)
G246632 NA non-coding downstream 36923 4597952 ~ 4598294 (-)
G246587 NA non-coding downstream 75780 4557111 ~ 4559437 (-)
G246603 NA non-coding downstream 78207 4556726 ~ 4557010 (-)
G246597 NA non-coding downstream 100849 4532796 ~ 4534368 (-)
G246611 NA non-coding downstream 137548 4487312 ~ 4497669 (-)
G246600 NA non-coding upstream 10572 4654977 ~ 4655439 (-)
G246658 NA non-coding upstream 69686 4714091 ~ 4714359 (-)
G246662 NA non-coding upstream 80111 4724516 ~ 4725178 (-)
G246669 NA non-coding upstream 105410 4749815 ~ 4750141 (-)
G246676 NA non-coding upstream 136361 4780766 ~ 4781052 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 737526 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2713796 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2830064 1801528 ~ 1806454 (-)
G244358 NA other downstream 4064189 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 284339 4927533 ~ 4931420 (-)
G246780 NA other upstream 566705 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1279135 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G19113 NA unknown CM030122.1 CM030122.1 50551880 ~ 50552985 (+)