CI01000057_04647822_04649004 (NPFFL)


Basic Information

Item Value
gene id CI01000057_04647822_04649004
gene name NPFFL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4647773 ~ 4649004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04647822_04649004.mRNA
ATGGCCAGATCTACTCCAGTGCAGATACACATGAGCAGAGACGGAACTTGTCAAACTGTAGTAATGGATGCAGGTGTGTGGTTGGTGATTGGCATGCTGCTGGTGATGACTGATATGAGCCAGTCCATCCCGAAAGATGACATGCTAGAGCAGAGCAAACACCTGCTGGAATCACGCGAGGACTTCGACGGGAACATGCTGGAGAGTCGAGGGGCCACTGAAGAGCAGATGGATCATCTACTGGAGGATCGTCTTCTGGTAGAAATGTTGCGGTCTTTACTCCACAGCTCTCAAAGATATGAACGCAACCCTTCAGTGCTGCACCAGCCCCAGCGGTTTGGTCGGGGGGCTCGGAGTGGCTTGTCCACAGAAGAAAGGATACAGTCTCGGGACTGGGAGACAATTCCCGGACAGATATGGAGCATGGCTGTGCCACAAAGATTTGGCAAAAAATAACACCAAGCCATCATAAAAATTGAGTGATGTCTTAGAAGTATTGAATAAA

Function

symbol description
npffl Predicted to enable neuropeptide hormone activity. Predicted to act upstream of or within neuropeptide signaling pathway. Orthologous to human NPFF (neuropeptide FF-amide peptide precursor).

NR:

description
neuropeptide FF-related PQRF precursor

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG:

id description
K05247 NPFF; neuropeptide FF-amide peptide

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04647822_04649004.mRNA True 505 mRNA 0.50 3 4647773 4649004

Neighbor

gene id symbol gene type direction distance location
CI01000057_04635274_04644405 NA coding downstream 3368 4635217 ~ 4644405 (-)
CI01000057_04597494_04597814 NA coding downstream 49959 4597415 ~ 4597814 (-)
CI01000057_04583096_04590861 ISY1 coding downstream 56912 4582911 ~ 4590861 (-)
CI01000057_04560576_04573644 NA coding downstream 74129 4559640 ~ 4573644 (-)
CI01000057_04543887_04545600 NA coding downstream 101772 4542871 ~ 4546001 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding upstream 8258 4657262 ~ 4663499 (-)
CI01000057_04718947_04721031 NA coding upstream 69914 4718918 ~ 4721076 (-)
CI01000057_04728914_04731946 NA coding upstream 79868 4728872 ~ 4733723 (-)
CI01000057_04743808_04746558 NA coding upstream 94402 4743406 ~ 4748097 (-)
CI01000057_04787300_04788191 NA coding upstream 137708 4786712 ~ 4788191 (-)
G246632 NA non-coding downstream 49479 4597952 ~ 4598294 (-)
G246587 NA non-coding downstream 88336 4557111 ~ 4559437 (-)
G246603 NA non-coding downstream 90763 4556726 ~ 4557010 (-)
G246597 NA non-coding downstream 113405 4532796 ~ 4534368 (-)
G246617 NA non-coding downstream 151315 4495587 ~ 4496458 (-)
G246600 NA non-coding upstream 5973 4654977 ~ 4655439 (-)
G246658 NA non-coding upstream 65087 4714091 ~ 4714359 (-)
G246662 NA non-coding upstream 75512 4724516 ~ 4725178 (-)
G246669 NA non-coding upstream 100811 4749815 ~ 4750141 (-)
G246676 NA non-coding upstream 131762 4780766 ~ 4781052 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 750082 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2726352 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2842620 1801528 ~ 1806454 (-)
G244358 NA other downstream 4076745 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 279740 4927533 ~ 4931420 (-)
G246780 NA other upstream 562106 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1274536 5923540 ~ 5927295 (-)

Expression


Co-expression Network